| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0146 |
|---|
| Symbol | |
|---|
| ID | 8366548 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 171055 |
|---|
| End bp | 172239 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644982565 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_003140272 |
|---|
| Protein GI | 256818993 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT ATGGTATAAA AATCGCTTTT ATCCTTATAG GAATTAGTCT ATCAGCCTGC
AATGGCACTC CTACAACTAC CAATAATCAA AAGCTCGAAG AGCGCGAAGA ACACCACGAA
GAAGGAGGCA ACCTCACCAC CCTTACCCAA GCTCAAATCC AAACTGTAGA TATTCGTTTG
GGACATATAG AAGAAAAAGC TCTTGCCGCT ACCCTCAAAG CCAATGGAAT ACTGAGCGTG
CCTGCCGACC ATCAGGCGAA GGTATCGACT GTATATGCGG GGATTATCAA GAGCGTAAAG
GTAGAGATAG GCAGTTATGT GCAAAAAGGG CAAGTAATCG CTACTGTTTC TAACCCAGAA
TTCTTGCAAC AACAACAGCG CTTGCTCACC GTTAATGGTC AGATAGAACT TGCTAAACAA
GAACTTGACC GTCAGCAAAC CCTCTATGAA GGGAATGCTG GTACTGGTAA GAACCTACAA
GCCGCTACTA CTCAGCTACG CACTCTCCGT ACCGAAAAAG CTTCGCTTGA AGAACAAATA
CGCCTAATGG GCTTAAACCC TCAAACACTC ACCGATAAGG GAATGCAATC TACTTTGGCG
ATAGTGGCTC CTATTAGTGG GAATATCAGT GCGGTATATA CTAACAAAGG GGCTTATATA
GATGCCTCCA CCCCTATTGT GGAAATCATC GACAACAGTT CGCTACACCT GCACTTGCAA
GTGTATGAGC GTGACTTGCC TTACATTAAG GTAGGACAAC AAGTGCACTT CAACCCTACC
AATAACACCT CTCGCGAATA TGATGCCCAA GTGTATAACA TTGCGGCTTC GTTTGAAAAC
GAAAGCAAAA GCATCATTGT ACATTGCCAC GTAGAGGGTG ACAAACAAGG GCTCATCAAT
GGAATGAATG TAACAGGGGT TATCAGTCTT GACAAACAAA CGACCCCTGC TGTACCTAAC
GAGGCTATCG TAGAGGATGC TGGTAAATCC TACATTTTTC TGGTAACCCA AACTTCGGAT
AAAGAAACCT CTTTTGAGAA AGTGGAGGTA GTAAAAGGAG CTTCCGAAAG TGGGTATACT
GCCATTGCCC CTGTAAAACC TATAGCCCCC GAACAGACTA TTGCCACCAA AGGAGCATTC
TTTATCAACG CAACCTTAGT AAATGCTGGA AAAGATAGTG ATTAG
|
|---|
| Protein sequence | MKKYGIKIAF ILIGISLSAC NGTPTTTNNQ KLEEREEHHE EGGNLTTLTQ AQIQTVDIRL
GHIEEKALAA TLKANGILSV PADHQAKVST VYAGIIKSVK VEIGSYVQKG QVIATVSNPE
FLQQQQRLLT VNGQIELAKQ ELDRQQTLYE GNAGTGKNLQ AATTQLRTLR TEKASLEEQI
RLMGLNPQTL TDKGMQSTLA IVAPISGNIS AVYTNKGAYI DASTPIVEII DNSSLHLHLQ
VYERDLPYIK VGQQVHFNPT NNTSREYDAQ VYNIAASFEN ESKSIIVHCH VEGDKQGLIN
GMNVTGVISL DKQTTPAVPN EAIVEDAGKS YIFLVTQTSD KETSFEKVEV VKGASESGYT
AIAPVKPIAP EQTIATKGAF FINATLVNAG KDSD
|
|---|
| |