Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cmaq_1648 |
Symbol | |
ID | 5709547 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Caldivirga maquilingensis IC-167 |
Kingdom | Archaea |
Replicon accession | NC_009954 |
Strand | - |
Start bp | 1723034 |
End bp | 1724806 |
Gene Length | 1773 bp |
Protein Length | 590 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641276156 |
Product | type II secretion system protein |
Protein accession | YP_001541461 |
Protein GI | 159042209 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1955] Archaeal flagella assembly protein J |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.505042 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.00186987 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGGACTTTG ATGAATTATC ACTAGTGGTT ACTGAACCAT TAGTCAACTG GTATGTTAAG AGGCGTGGGG AGCAGTTAGA GAGGGTGCTG AAGAATGCTA AGGTTTACAT GCTTCCTGAA AGATTCATGG CAAGGGTCTT CTTCGCAACA ATAATTACAG CCGTTCTCTC AGTACCCATT GGATTATACT TAACCTACAA CAGTATTGAG TCAATTATGG GTTCATTTAA TTTAACGGTT AAGTCAATTA CAGTTCTCAG CATAGGCTTA GTAATGATTG TCCTACCCTT CATAGTCTAC GTAATGATGA TGACGCTACC TAAGATGCAG CTCTCCGACC TTCAATATAA GGTTGACTCA GAATTACCCT TCTTCGCAGC GTACTTAGCC ATGATTTCCC AATCAGGGTT AAGCGTTACA TCAGCCATAG AGAGGTTAGC CAACATTAGG CTACTTGAGG CCATAGGCAA GATAGCTAGG GAAATAGTTG TTAAGAATAA GGCGATAGGC ATGGATCCGT TAACAGCCTT AACGGAATCA GCGTTAAGCA CGCCAAGTCA CTTATTCCAA AACTTAATAA TGGGTTACGT AACTAACGTT AGGACTGGGG GAGACATACT TCATTACCTT GAAATAAGGC TCAATGAAAT AGTTAACGAT ACGCTTGATA AAATAAGGAG GGGTGCTGAA TTCCTATCAA CATTAATGGA ATCATACATT GGGGCTGGGG TAATTCTACT AATAGGCCTT AACGTACTTT ACCTAGCCCA AGCAATAACA CCAACAGGTA ACTCAGTGAG CGCGCTTCAG CAGGCGGTTA GTAATAATTT ACTCTTCGGT CTATTGGTTA TCCCAGCAAT ATCAGTGGCG TTCATATACC TTGGTGAGGT CTCAATATAT AGGGTCCCGT ACACTGACGT TAGGCCTTAT ATAGCGGTTG GTGTATCATC AATGGTAGCC ATGGTGGCTC TACTAATAGG CTACAACACG GTGTTTCACG GTGACTTAGG CTACTCAATA AACGTGGGCC CGGTTAGCCT GGATTTCGCA ACCTACATGG CGGTCGTCTT AATTATAGCC TACGTCCCAG CAGCGTTATA TGCTGAGAGG GTTATTGCTG AGAGGCGTAG CCTTGAGAGG GCCTTCTCAG ACTTCCTCAG GGACTTCACT GAGTTACGTA AAAGTGGCTT CACGCCTGAG AAGATTATAA GCACGCTGGC TGACACTAGG GATTATGGTG CATTATCCAG GTACCTTAAG GATATTAGTA AGCAGATTAG GTATGGTATA CCGATTAGGG TTGTCTTATC GGAATTCATG AATAGGACAA GGTCCTATTA CGCCAGGGTT TTCGCATGGC TGCTGCTTGA GTCAATAGAG TATGGTGGAG CAACCCCTGA GACCCTGGAG TCCCTTGCAT CATTCTCATC CCTAATGATT AGGATTAATG ATGATTTACT CGCAAGGCTT AAGCCACTTA GGTTCGTACC CTACATAGGG GCCATGATAC TTACCTTAAC CCTGGTGATT ATGGTGTTCA CCGTGGTTGG CTTATCCAGT GTCTTCCTGC ATATTCCCCA ATACTACGTT AACTACGTCG TAGGTAGCTT CGCCTTAACC ATTGTGGTTG ACTCATTCGT AATGGGTTTA GTGGCGGGTA AGCTGGGTGA GGGGGAGTTA TCCGCTGGCT TTAAGCATGC AGTAGCCATA ACGGCAATAG TACTTGTAAT ATACTTAGCT TCACCATTAA TATCAAAGGT GTTTGTAATA TGA
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Protein sequence | MDFDELSLVV TEPLVNWYVK RRGEQLERVL KNAKVYMLPE RFMARVFFAT IITAVLSVPI GLYLTYNSIE SIMGSFNLTV KSITVLSIGL VMIVLPFIVY VMMMTLPKMQ LSDLQYKVDS ELPFFAAYLA MISQSGLSVT SAIERLANIR LLEAIGKIAR EIVVKNKAIG MDPLTALTES ALSTPSHLFQ NLIMGYVTNV RTGGDILHYL EIRLNEIVND TLDKIRRGAE FLSTLMESYI GAGVILLIGL NVLYLAQAIT PTGNSVSALQ QAVSNNLLFG LLVIPAISVA FIYLGEVSIY RVPYTDVRPY IAVGVSSMVA MVALLIGYNT VFHGDLGYSI NVGPVSLDFA TYMAVVLIIA YVPAALYAER VIAERRSLER AFSDFLRDFT ELRKSGFTPE KIISTLADTR DYGALSRYLK DISKQIRYGI PIRVVLSEFM NRTRSYYARV FAWLLLESIE YGGATPETLE SLASFSSLMI RINDDLLARL KPLRFVPYIG AMILTLTLVI MVFTVVGLSS VFLHIPQYYV NYVVGSFALT IVVDSFVMGL VAGKLGEGEL SAGFKHAVAI TAIVLVIYLA SPLISKVFVI
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