| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1274 |
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| Symbol | |
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| ID | 5708674 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Caldivirga maquilingensis IC-167 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009954 |
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| Strand | - |
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| Start bp | 1341634 |
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| End bp | 1344018 |
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| Gene Length | 2385 bp |
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| Protein Length | 794 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641275780 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001541091 |
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| Protein GI | 159041839 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.000000437479 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATCTGT ATACCTCAAG GAGTGCAACA GCAGTCACCT CAATAATAGT TGCCTTAGTT
GCCGCTGTGG TTGGGTTATA TGCCTCTCAT GTTGTATATG CTCAAGAATC CCAAGTAACG
TACACGTTCA CCACCGCCTA TTTCGGGTGG ACGTGGTCCC CTGCAGCCCA CTACTGGAAT
CCATTCGCCC CCATTAATTA CATAGATTGG CCAGCCTTTG TAGCAATGCC TCTTGCCGCC
TATGATGACC CTACTGGTCA GTGGTGGCCT ATTCTAGCCA GTAATTGGAC TGCGTTTCCT
CAAAATAAGA CTGTAATCAT CTACCTTAGA CATAACATCT ATTGGTTTAA TGGTTCAGCG
GTAATGCCCT TCACTGCTTG GGATGTTTAC GCTGAACTCT ACATTGGTGT TAAGGCATTC
AGCTGGTACT ACCCATACTT AACACCCCAG AATGCGAGTG AGGAGATTAG GGTGCTTAAC
AATTATACGT TGGAGATAGT TTTCAACATA TGGTCACCCA CAGAGTACTA TTGGATACTC
ATGCAGACCA TAGCAACTCC ATGGCCCGTG TGGAAGCCTA TTGTTGAGAA GCTTCAAACA
ATGAATGCCA GTCAAGCCTA CACCTTTGGT CAAGTTAACA TAACCGAGTT CAACCCACCC
ATGTGGAGTA ATGGGCCATA CTACGTGGCA TCAATTGGAC CAACCTACAT AACTCAGAAC
CTTGACCCAA TGTACTTTGA TGGTAAGCCG TTGCTGGCTG AGTGGGATAA GATACTACCA
TTCCACACAT GGCAGTACTA CCCAACATTC ATTGCATGGA ACAACCCAGG TGCATCAACT
ATCTTAGCCG CAATAGCAGC CCAGAAGCCA GTTTACATTG AGTGGATAGC CTTCAGTCTT
CTTAAGGATT TACAGATAAT AAATAGTACA CCTGGCTTCA AATACTATGT AATGCCCGAC
TTATCAATAT TCGGCATAGG TATACCAACA TATTACCCGT TTAATATTCC TCAGGTTAGG
CAAGCATTCC TATACATCAT TAATAGGAGT GAGGCCGCTG CCGCCTGGGG ACCACCGTGG
TTAACGTACC CAGTTTACAT TAATGTTCCA GCACCAGCAC CAACAGCTGC CTCAGGGCTT
TGGTTAACAT TCCCGAAGGA TCTTAGAAGC ATAGCCGTTA ACTTCACTGA ACCCAATTGG
ACTAAGGCAG CTCAACTACT GGAATCAGCC GGCTTAAAGT ACAAGAATGG TCAATGGTAC
CTACCCAACG GAACACCACT AACACTAACA ATATACGCAT CAGCACCAAT GGTTAACTGG
ATCACGCAGG CTCAAGTCGC TTTTAACCAA CTTGAAGAAT TTGGAATACC CGTTAAATTA
ATTACACTGG AATCATCAAC ATACTCCACT GAAGTATCTC AATGCCAACT ACCTGCTGTG
GTTGACTGGA TGTTCGCCGG TTCTAATAAG GGTGGTTACT CAACACTATG GATATCATAC
GATGTTGCAT TCACAATGAC ACATCCAGCG CTTTTGCCAT CTGGCTGGTG TATTCCTGGC
CACACTACGC CTTTCGCCTA CCCGATTGTT CAGAATAATG AGATTACCGG CTGGTATTGT
AAACCATTAA CCACTAACCT GCCTATACCG AATAATACAA TTATCTGGTG CATTAACTCA
ACCTATGGCT ACATTAACTT GAGTAATTGG CAGAATGCCA TAATAGCGGC TGAGCCAGGC
AGCAGTACCT ATGAGGAGCT TCTTAAGGCC TACTTCTCAT GGTTTGAGTA CTGGGTACCT
GGAGTGGAAA TATCAACAGC CACAATAACT GCAGCATTCC CAGTAAAGAT AACTAACCCA
ATGTGGGCTT ATGAATGCAT GAACTTCAAG AATCCTAAGT ATACTAAGGC AGCATATTCA
CTATTTCACC AATATGCAGT TGCTGGATTA CCTCCCGAAT TCAATACAGT ATTATCACTA
GGCGCCTACG CACCGCAGGG TGTTATTCCT CCTTTGGCTG AGGCTATTAT TAATGGTAGT
CTTTGGACTA ATCCGTATCT GCATCAGTAC GCTGTCTTCA TTGGTTTGCC TAATCCTGAT
CCTCAGTTGC AGGCTTGTGT AGCATCATAC TTCCACACAA CGTACACACC AGTTACTACA
ACCACTACTT CAACTGTTAC CTCAACCACT ACGGCTGTTA GCACTGTTAC AAGCACAGTC
ACAACAACTG CAGTTAGCAC TGTGACTAGC ACAGCAACAA CCACAGCCAT ATCAACCGTA
ACCGTGACTA AACCAGTAAT ATCAACAGCA CTAATAGCAG GAATAGTAAT AATAGTAGTG
GTTATTGCCA TTGTTGCAGC AATAATAGCG TTGAGGAGAA GATAA
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| Protein sequence | MDLYTSRSAT AVTSIIVALV AAVVGLYASH VVYAQESQVT YTFTTAYFGW TWSPAAHYWN
PFAPINYIDW PAFVAMPLAA YDDPTGQWWP ILASNWTAFP QNKTVIIYLR HNIYWFNGSA
VMPFTAWDVY AELYIGVKAF SWYYPYLTPQ NASEEIRVLN NYTLEIVFNI WSPTEYYWIL
MQTIATPWPV WKPIVEKLQT MNASQAYTFG QVNITEFNPP MWSNGPYYVA SIGPTYITQN
LDPMYFDGKP LLAEWDKILP FHTWQYYPTF IAWNNPGAST ILAAIAAQKP VYIEWIAFSL
LKDLQIINST PGFKYYVMPD LSIFGIGIPT YYPFNIPQVR QAFLYIINRS EAAAAWGPPW
LTYPVYINVP APAPTAASGL WLTFPKDLRS IAVNFTEPNW TKAAQLLESA GLKYKNGQWY
LPNGTPLTLT IYASAPMVNW ITQAQVAFNQ LEEFGIPVKL ITLESSTYST EVSQCQLPAV
VDWMFAGSNK GGYSTLWISY DVAFTMTHPA LLPSGWCIPG HTTPFAYPIV QNNEITGWYC
KPLTTNLPIP NNTIIWCINS TYGYINLSNW QNAIIAAEPG SSTYEELLKA YFSWFEYWVP
GVEISTATIT AAFPVKITNP MWAYECMNFK NPKYTKAAYS LFHQYAVAGL PPEFNTVLSL
GAYAPQGVIP PLAEAIINGS LWTNPYLHQY AVFIGLPNPD PQLQACVASY FHTTYTPVTT
TTTSTVTSTT TAVSTVTSTV TTTAVSTVTS TATTTAISTV TVTKPVISTA LIAGIVIIVV
VIAIVAAIIA LRRR
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