| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_1476 |
|---|
| Symbol | |
|---|
| ID | 6354789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium limicola DSM 245 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010803 |
|---|
| Strand | + |
|---|
| Start bp | 1581786 |
|---|
| End bp | 1584782 |
|---|
| Gene Length | 2997 bp |
|---|
| Protein Length | 998 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 642669083 |
|---|
| Product | Miro domain protein |
|---|
| Protein accession | YP_001943511 |
|---|
| Protein GI | 189346982 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.184541 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTTT TAAAATGCAA TTTATACATA GTAGGCAGCC GAGGAATTGG AAAGACATTT
TTCAGGAGAG CACTAGATGA GTTTATTCAC TTTGAAAAAA GACCGCCCTT GGACAAGTTT
GATGGGCATG ATTGGATTAT ACGAACAGAA TATGGTCATG TAGAAGTTGA GATAAAAGAA
TACGGAAATT TTGATTTTCC TTATATTTTT TCTGAATCAA AGGATTCTTT TGAATCAAAG
GAAGCCAAGA GCATTATTCT ATACATTACT GGCGAGTATG AACGTAAGTT AGAGTTTTCT
ATTCCTCAAG AAGATATTGA ACAGCTGAAA AACCTTTCAA GTAAGGCAAC AATTATCGTT
GCACCTACAT TTAGACCTTA TGAACTCGAA AAAAACATAA ACTTAAATCC ACTAAAAAAA
CTTGTTCCAT TTGTTGAGTA TTTTCTGCCC ATACATGATT TTCATTTCAG AGAATATGAA
GGCATGTCTC AAATAGCCTA TGTACTAAGA CAACTTTTAA TAAATTCACA TACTTCGTCT
CTAAAACAAG CCAAAGAACG AATAAGAGAA AACTTTGAAA CTAAAAACCC TACTTTAGAT
TTAGGAAACT TAGGTTTAAC CAGCCTTAAT GATATAAAAG AGTTATTTCA AAATACACAC
CTAAAAACGT TAATTCTGAG TAACGAGTGG GGTGAATATC ATGACAGAAG TTGGGTAAGA
AAGACTAGCA ATAATAAACT TGAACCGAAT ATATTGTTTG GATTTCCAAA AGAGATTAAC
AACTTAAAGA ATCTTGAAAC TCTTATTGCT GGCGGTAATT GGAGAGATTC TAAAAGAAGA
ACAAGATACT ATTTTTCAAA TTGGCATATC ACCGATATAA AACCTTTATC AAGTTTAAAG
AGGTTATCCA TATTGAATTT GAGTAATAAT GAAATTGAAA CATTAACACC TCTTTCAAAT
CTTTCGAGTC TATCAAAACT TTATTTAAAC AACAACACAA TAAATAGTTT CCCAAGTATT
GATAAGTTTC CAAAGCTAAA AGAATTGTAT CTAAGCAACA ATCAACTTAA AAGCATTAAT
TTTTTATCTG CCCCAACAAC AATTCAAACT GTTGATTTGC ACTCAAATCA AATAACCGAT
TTAACTCCAA TAAAAGAGTT AATATCTAAG ATTGATATTA AAGATTCCAA GTGGGAAAGC
AAAACTATTA GCATTGGGCG AAATCCGCTA TCAATTCCAC CAGCAGAAAT TGTCGCTAAG
GGAATGCAGA GTGTAATTGC ATATTTTGCG CAACTTGAAG CTGAAAATGA AATTCAAATC
AAACCTTTTA AAAATGCCGA CATAAAACTC ATTATGGTGG GTAATAGTAA TGTTGGTAAA
TCAACTTTTG TTCATTGGCT GAAAAATGAA AAAGTAGATA AAACACTACC AACAACACAT
TGGTTGGATT TGGGAGTTTG GAATGCTAAA AGAGGTAGTA AAAATTATAC TGTAAGAATT
TTTGATTTCG GTGGTCAGGA ATATTATCAT GATACACATC ATCTGTTTTT TACAAACAGA
ACAGCATATA CGCTAATGTG GGATGGAGCT TCTAACCGTT TTGACGAATT AGAAATAAAA
CAAACACAAA GCGATGGTGA AAAAAAGGAT GTGAAAATCG AGACTTTCCC TCTTGAATAT
TGGCTTGATT CCATTAGGTA TCATACACAA AAAAGAAAGT TGTCTCAGAT TGAGAAATCC
ATATCAAAGA TTCTTGATGA ACGAGACGAG CAGATTGAAG AATCTTTAAG AAATAAAACT
GATTGGACAA AATCAGTAAC TGCGTCCATA AACAAAGTGT CAGAAACCTT ACAAGAAAAA
GAAGAAGAGA ATATATTGGT TTTACAAAAC AAGGTAGATT CCAAGCAATT AAAGATTTTT
CTTAATGAAG AAGAACTAAG TACTAATTAT CCTAAGATAT ACGATTTTGA ACAAATTTCG
CTGTATAAAA ATGAGAGGCT TGAAATATCA AAAAAGACTC TTTTTGACAT TTTCGACAGT
TTAGAAATTT TAAGCCGACA GTTCCTTGGC ACATGGAACT ACATAAAACA AGACATTGAA
AAACAACAAT TCAGTAAAAG TTTCTCAAGT GACGACTTTC TCAATTATTG TAATGATATT
ATTAAAAACT TGCCTGAGTT AAAAAGAAAA TTAAATGCTC AACGCAAAAA AGTGCTTTTC
TCATCAGTAG ACTCTAAAGT TTTCGCCTCG TTTTTAGCTG ACATTGGTTT ATGCCTTTAT
TATCCTGAAA ATAGTGAACT AAAGGAAAAG GTGTTTTTAA ATCAAAATCA AATACTGAAC
GATTTAAATA ATATTCTTCT TTCTATTAAC AAAAAGACTG GAGCAATTAG TGAGCTTGAA
ATTGCAAGTA CATTAGGTGA AAGTGAATCT AGTGATAAAG TGCAAGATGT AATCAATCTA
ATGCTTCATT TCAAAATTCT TTTTAGACAT CCTATTGCAG ACAAAAAATC TTTTATCGCA
CCGCTTTATT TACCACCAAA TCCGCCAAAG AGCATCAAAT TATTCCAATC TCTTTTTGAA
AAACCAGTTT ATCGCTTTAA ATACGAAACG TTTATTCATA AAAGTGTAAT ACTGGACTTT
TTTCATACTT ATGGTTCTAA AGCATTAAGC GAAACGAGTG ATGAGTCTTC ATTTTATTTT
TGGAAAAATG GCATTGTAAT AAAGGACGAA AAAAGTAACG ACATCATAAT GGTGAAGTTT
GATCCTTGGA ACAACAAAAG CAAATGTGCT TCACTTAACA TTTATGCAGT AAATGGTACA
AACGATAAAT TCGTTAAGAC AATTGTAGAT TATATTGATT CCATAAATGA AGGAATAAAC
GTCAAGAAGC TTGTTCCTAA TGAATCTCAT GAAGAATTTA TACCACTAGA TATTATTCAT
CAAAGCGAAA AAGAACAAAA TCCAATATTT CACTTCAATA AGAAATATTA CCGTTAA
|
|---|
| Protein sequence | MEFLKCNLYI VGSRGIGKTF FRRALDEFIH FEKRPPLDKF DGHDWIIRTE YGHVEVEIKE
YGNFDFPYIF SESKDSFESK EAKSIILYIT GEYERKLEFS IPQEDIEQLK NLSSKATIIV
APTFRPYELE KNINLNPLKK LVPFVEYFLP IHDFHFREYE GMSQIAYVLR QLLINSHTSS
LKQAKERIRE NFETKNPTLD LGNLGLTSLN DIKELFQNTH LKTLILSNEW GEYHDRSWVR
KTSNNKLEPN ILFGFPKEIN NLKNLETLIA GGNWRDSKRR TRYYFSNWHI TDIKPLSSLK
RLSILNLSNN EIETLTPLSN LSSLSKLYLN NNTINSFPSI DKFPKLKELY LSNNQLKSIN
FLSAPTTIQT VDLHSNQITD LTPIKELISK IDIKDSKWES KTISIGRNPL SIPPAEIVAK
GMQSVIAYFA QLEAENEIQI KPFKNADIKL IMVGNSNVGK STFVHWLKNE KVDKTLPTTH
WLDLGVWNAK RGSKNYTVRI FDFGGQEYYH DTHHLFFTNR TAYTLMWDGA SNRFDELEIK
QTQSDGEKKD VKIETFPLEY WLDSIRYHTQ KRKLSQIEKS ISKILDERDE QIEESLRNKT
DWTKSVTASI NKVSETLQEK EEENILVLQN KVDSKQLKIF LNEEELSTNY PKIYDFEQIS
LYKNERLEIS KKTLFDIFDS LEILSRQFLG TWNYIKQDIE KQQFSKSFSS DDFLNYCNDI
IKNLPELKRK LNAQRKKVLF SSVDSKVFAS FLADIGLCLY YPENSELKEK VFLNQNQILN
DLNNILLSIN KKTGAISELE IASTLGESES SDKVQDVINL MLHFKILFRH PIADKKSFIA
PLYLPPNPPK SIKLFQSLFE KPVYRFKYET FIHKSVILDF FHTYGSKALS ETSDESSFYF
WKNGIVIKDE KSNDIIMVKF DPWNNKSKCA SLNIYAVNGT NDKFVKTIVD YIDSINEGIN
VKKLVPNESH EEFIPLDIIH QSEKEQNPIF HFNKKYYR
|
|---|
| |