| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_0410 |
|---|
| Symbol | |
|---|
| ID | 6354405 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium limicola DSM 245 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010803 |
|---|
| Strand | - |
|---|
| Start bp | 451547 |
|---|
| End bp | 454486 |
|---|
| Gene Length | 2940 bp |
|---|
| Protein Length | 979 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 642668041 |
|---|
| Product | peptidase M16 domain protein |
|---|
| Protein accession | YP_001942482 |
|---|
| Protein GI | 189345953 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0612] Predicted Zn-dependent peptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTATT CACCGCAAAG AAGAAACCTC GTTCCGTCAG GAATAGCGTT ATTCTTTTTT
TTGCATTTAC TATCCTGCAG GCCAATGATG AATGACGTCA AAACGTACCC GTACACAACC
GTTCCCGGAG ACTCGCTTCA CACACGAATC TATACACTCG GCAACGGCCT TACCGTTTTC
ATGAGTCCCT ACCGCGACGA ACCGCGGATT TACACATCGA TCGCCGTTCG CGCCGGAAGC
AAGAACGACC CGGCGGAAAC CACCGGTCTG GCCCACTACC TCGAACATAT GCTGTTCAAG
GGCACCGACT CAATCGGTGC GCTGAATTAC GAAAAAGAAC ATGCCGAGCT TGAAAAAATC
ATCAACCTGT ACGAAGAGTA TCGGACAGCG TCAGATCCTG ACAAACGGGC TGCAATTTAC
CGGGATATCG ACAGTATTTC AAATGTGGCC GCCCGGTACA CGGTACCCAA CGAGTATGAC
AAGCTCCTGA ACTCGATCGG AGCACAGGGC ACCAATGCCT ACACATGGGT GGAGCAGACC
GTTTATATCA ATGACATTCC ATCGAACAAA CTCGATCAGT GGCTCACCAT AGAGGCGGAA
CGTTTCCGCA ATCCTGTTAT GCGTCTCTTC CATACCGAAC TTGAAACCGT CTATGAAGAG
AAAAACATGA CGATGGACAG CGACAGCCGT AAAATCTGGG AGAATCTCTT CTCCGGACTT
TTCAGAAAGC ACACCTATGG CACCCAGACA ACCATAGGAG AAGCCGAACA CCTGAAAAAT
CCCTCGATCA GGAATGTCAT CAACTACTAC CGCTCCTACT ATGTGCCTAA TAATATGGCG
CTCTGTATTG CCGGCGATTT CGACCCTGAC GAAACTATCA GGATGATCGA TGAGAAGTTT
TCCGTTCTGG AAGCCAAAGA GATACCTCTC TTTACCCCGG CGGTTGAAGA ACAGCTGCAG
AAGCCGGTTA TTACAAAAGT CAAGGGCCCC GAAGCCGAGG AACTGGTGAT CGGATACCGT
TTCAGCGGCG TCAATACCAG AGATGCCGAC TACCTCACCA TGATCGACAA GGTGCTTTAC
AACCAGACGG CGGGCCTGAT AGACCTGAAC CTAAACCAGC AGCAGAAAAC CCTCGATGCG
GGGTCGATGC TTGTGCTGAT GAAGGACTAC TCCGCACACC TGCTGAGCGC AAAACCACGT
GAAGGCCAGA GCCTCGATGA GGTCAGGAAT CTCCTGCTCG AACAGATCGA ACAGCTCAAG
AAAGGCAACT TCCCCGACTG GCTGCTCGAA GCTGCGGTGA ACGACCTGAA AATCGAACAG
CTCAAACTGT ATGAAAGCAA CAAGGGACGG GTTGAAGCAT ACGTCGATTC GTTTATCTGG
GGAATGGACT GGAGCGACTA TAACAGTCAG ATCGAACGAT TGAGCGCCAT CACGAAAGAT
GAGTTGACGG CTTTCGCAAA AGCTCATTAC GCGACCAACT ATGTCGCGGT TTATAAAGAG
CACGGCAGCG AGAAAAGCAG TCCTAAAATA CAGAAACCTC CGATCACGCC GATCAAGGTA
AACCGGGATA CATCCTCCCT GTTTGCAGGA AATATTCTGG CGAAGAAATC GGAAAATATC
GAGCCGACAT TCCTCGATTA CAGGAAAGAT ATCGGTTTTT ATGATGTAAA GCCGGGCATA
AGGCTTCACT ACCTCCAGAA CAACGAAAAC GATCTGTTCT CGGTTTATTA TGTTTTCGAC
ATCGGAAAAA ACCACAGCAG AAAAATCGAT CTCGCTCTCG ATTATCTCTC CTATCTGGGG
ACTTCTGCAT TGACACCTGC GGAGTTCAGC CAGGAACTCT ATAAAAACGG AGCAAGTTTT
TCGGCGTTCA CCTCTGACGA TTATGTCTAT CTGAAACTTT CCGGTCTTAA GAAAAATTTC
CCGGCGGCAC TGCGCCTGCT TGAACAACTG CTTTCCGATA CACGTCCCGA TGAAGCAGCT
CTCGAAAAAC TCAAGGCTGG CACCATGAAG GAGAGGGCTG ACGATAAGCT TTCAAAGAGA
AAGATTCTCT TCGAGGCCAT GGCCAGCTAT GGTAAATATG GCCCTTCATC GCCGTTCACC
AACGTACTTT CCAATGCGGA ACTTGAAGCG ATCTCTTCGA AAGAACTGCT TGACGAGATA
AAAAACCTCA TGCAGTACCG CCACCGGGTT CTGTATTACG GCCCGGATTC CGCGGAAAAT
CTGCTTGCCG AGCTCCGTGC GGTCCGCGGA TACCCCGCAA CGTTCCGTGA GGTACCGTCC
GTCGAGTTCT ATCCTGAACT CGAACAGCGA AACAATCTGG TTTATGTTGT CGATTACGAC
ATGACCCAGG CAGAAGTCAT TATGCTGACC AGAGACGACA GCTACAATTC GGAGATGGTT
CCGCTCGTAA CCCTTTTCAA CGAATATTAC GGCGGCGGGA TGTCCTCGGT TGTGTTTCAG
GAGTTGCGCG AAGCCAAAGC GCTTGCCTAT TCGGTCCTGT CGGTCTATCG AATGCCTAAA
TTCCGTAACC GCCACAGCTA TCTTTTCAGC TATATAGGCA CCCAGGCCGA CAAGCTGCCG
GAAGCTCTCG ATGGAATCAG CAGTCTGATG CATGAACTGC CCGAGTCTCC GGAGCTTTTC
GCTTCGGCAA AAGAGGGTAT TATGCAGAAA ATTTCCACGG AACGGCTCAC GAGAAGCGAA
GTCCTCTTCA ATTACGAGGA CGCACAACGT CTCGAACTCG ACGATGATAT CAGAAAAAAT
ATCTATCGCG ACGTTCCGTC CATGACGCTT CAGGACGTAA AACTGTTCCA CCAGCAGCAT
TTCGGCAACA GGAACCATGT TATGCTGGTG CTTGGGGATA CATCCCGGCT CGATATGGAC
ACCCTTCGAC AATACGGTAC GGTAAAGGAG CTGAAGCTCG ATGAGCTGTT CGGATACTGA
|
|---|
| Protein sequence | MPYSPQRRNL VPSGIALFFF LHLLSCRPMM NDVKTYPYTT VPGDSLHTRI YTLGNGLTVF
MSPYRDEPRI YTSIAVRAGS KNDPAETTGL AHYLEHMLFK GTDSIGALNY EKEHAELEKI
INLYEEYRTA SDPDKRAAIY RDIDSISNVA ARYTVPNEYD KLLNSIGAQG TNAYTWVEQT
VYINDIPSNK LDQWLTIEAE RFRNPVMRLF HTELETVYEE KNMTMDSDSR KIWENLFSGL
FRKHTYGTQT TIGEAEHLKN PSIRNVINYY RSYYVPNNMA LCIAGDFDPD ETIRMIDEKF
SVLEAKEIPL FTPAVEEQLQ KPVITKVKGP EAEELVIGYR FSGVNTRDAD YLTMIDKVLY
NQTAGLIDLN LNQQQKTLDA GSMLVLMKDY SAHLLSAKPR EGQSLDEVRN LLLEQIEQLK
KGNFPDWLLE AAVNDLKIEQ LKLYESNKGR VEAYVDSFIW GMDWSDYNSQ IERLSAITKD
ELTAFAKAHY ATNYVAVYKE HGSEKSSPKI QKPPITPIKV NRDTSSLFAG NILAKKSENI
EPTFLDYRKD IGFYDVKPGI RLHYLQNNEN DLFSVYYVFD IGKNHSRKID LALDYLSYLG
TSALTPAEFS QELYKNGASF SAFTSDDYVY LKLSGLKKNF PAALRLLEQL LSDTRPDEAA
LEKLKAGTMK ERADDKLSKR KILFEAMASY GKYGPSSPFT NVLSNAELEA ISSKELLDEI
KNLMQYRHRV LYYGPDSAEN LLAELRAVRG YPATFREVPS VEFYPELEQR NNLVYVVDYD
MTQAEVIMLT RDDSYNSEMV PLVTLFNEYY GGGMSSVVFQ ELREAKALAY SVLSVYRMPK
FRNRHSYLFS YIGTQADKLP EALDGISSLM HELPESPELF ASAKEGIMQK ISTERLTRSE
VLFNYEDAQR LELDDDIRKN IYRDVPSMTL QDVKLFHQQH FGNRNHVMLV LGDTSRLDMD
TLRQYGTVKE LKLDELFGY
|
|---|
| |