| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cla_1152 |
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| Symbol | dapE |
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| ID | 7410316 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter lari RM2100 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012039 |
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| Strand | - |
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| Start bp | 1099950 |
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| End bp | 1101050 |
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| Gene Length | 1101 bp |
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| Protein Length | 366 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 643718278 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_002575725 |
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| Protein GI | 222824151 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0000000135979 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAAGTAG TTGAAATTTT TAAAGAATTA TGTAAGTTTA AATCAATAAC ACCAGATGAT
GATGGGGCAT TAAATTATAT CGCAGTGGAA CTTAGCGAGT TTGAGGCGTT TTTTATAGAA
AAAGAAGGTG TGAAAAATCT TTTGCTTACT AAAAAATTTA GTGATGATGG GGAACATTTG
GCTTTTGGTG GGCATGTGGA TGTGGTGCCT GCGGGAGAGG GTTGGAGCAA TGATCCTTTT
GAGCCTTTAG ATAAAGATGG GTTTATCTAC GCAAGAGGCG CACAAGATAT GAAAAGTGGT
GTGGCTGCTT TTATGTGTGC GGTTAAAGAA GTAGAAAATT TTAAAGGAAG AATTTCACTG
ATTTTAACAA GTGATGAAGA AGGTGAGGCT AAATTTGGCA CATTAGAAGT GCTTAAATTT
ATGAAAGAAA AAGATATATT GCCTGATTTT GCTGTGGTTG CTGAGCCAAC TTGTGATAAA
AAATTTGGAG ATAGCATTAA AGTAGGGCGT CGTGGCTCTA TCAATGCAAA ATTACTTATA
AAAGGTAAGC AAGGTCATGT GGCATACCCG CAAAAATGCA TTAATCCTGT GCATAATTTT
GCTTCGGCTT TGAAATTTTT AGCAGGATTT GATCTTGATC CAGGTGATGA GGCTTTTGCA
CCATCTAAAA TTGTTATTAC TGATATACGC GGTGGTATGG AAGTGTGCAA TGTAACCCCA
AATGATTTAA AATTGATGTT TAATGTGAGA AATTCTCCAC AAACTAGTTT AGAAGATGTA
AAAGCTTATG TAGAAAAGAC TTGTGAAGGG CTTGATTATG AATTAAGCAT AAATCAAAGC
TCAAAGCCTT TTTTAACACA AAGTGATTCT AAAATCGTAC AAAAGTTAAA CGAGAGCGTA
CAAAAAATCA CCCAAGTAGT GCCAGAGCTT AATACCAAAG GTGGCACTAG CGATGCGAGA
TATTTTGCTG AGTTTGGTGT GAAGGTAGTA GAATTTGGCG TGTGTAATGA TAGAATTCAT
GCCATTGATG AAAGAGTGAG TATAGAAGAG CTTGAAAAAT TGTATTTAGT TTTTAAAGAT
TTATTAGAGA ATTTTAACTA G
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| Protein sequence | MQVVEIFKEL CKFKSITPDD DGALNYIAVE LSEFEAFFIE KEGVKNLLLT KKFSDDGEHL
AFGGHVDVVP AGEGWSNDPF EPLDKDGFIY ARGAQDMKSG VAAFMCAVKE VENFKGRISL
ILTSDEEGEA KFGTLEVLKF MKEKDILPDF AVVAEPTCDK KFGDSIKVGR RGSINAKLLI
KGKQGHVAYP QKCINPVHNF ASALKFLAGF DLDPGDEAFA PSKIVITDIR GGMEVCNVTP
NDLKLMFNVR NSPQTSLEDV KAYVEKTCEG LDYELSINQS SKPFLTQSDS KIVQKLNESV
QKITQVVPEL NTKGGTSDAR YFAEFGVKVV EFGVCNDRIH AIDERVSIEE LEKLYLVFKD
LLENFN
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