Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cla_1039 |
Symbol | mfd |
ID | 7410773 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Campylobacter lari RM2100 |
Kingdom | Bacteria |
Replicon accession | NC_012039 |
Strand | - |
Start bp | 992437 |
End bp | 995376 |
Gene Length | 2940 bp |
Protein Length | 979 aa |
Translation table | 11 |
GC content | 28% |
IMG OID | 643718165 |
Product | transcription-repair coupling factor |
Protein accession | YP_002575612 |
Protein GI | 222824038 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.113966 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAGCTA AATTATATGA ATATTTATTA AGTAACAAAG CTGAGTTAAT AGTTTGTGAG AATGATAAAG AAGCAGATGA ATTAGCCCAG GTTTGTCTGT TTTTAAATTT AAAAACTTTC GTTTTGCCTG ATTTTAGAGC AGAATTTGGC AGTGACTTGC GCTCTTTTTC TAAAGAGCTT TTTGAAATTT GTAAAGTTTT AAATGCTTAT CATAAAGAAG ATGAAAATAA AATTTTAATT TCTCCTATAA AAACAATTTT GCAAAAACTC CCTGGAAAAA AGCATCTAAA AAATATTATT CTTAAAAGAA ATTCACTTCT TGCTTTAGAG AAATTTAAAG AAGAAATTTT ACATAGTGGG TATGAATTTG TTGATATAGT TCAAGATAAG GGTGAGATTT CAATACGCGG GGATATTATA GATATTTTTG CAATTAATGA AGAGCAACCT TTTAGAATTT TGCTTTTTTC AGATGAGATA GAAAGCATAA GATATTTTGA TATTCATACA CAAAAATCAA TCCCAAATGA ACTTTCAAAA ATTGAGATTT GTCCATTTTT AAATGCTTTT AATCAAGAAG AATATGAAAA TCTACAAGAA AAAATTCAAA ATTTTCAAAG TCAAAGCATT ATCAATGATG TTAATTCTTT AGGTTTTTGG TGTATTGATG ATTTTTGTGA TTATTCAGAT TTAAATTTCG TAAGCATAAA AAAATTTGAT ATAAATGATT TTGAAGAAGA TATTAGCAAA ATTAATCAAA ATATTTTACC TGAACCAAGA TTTTATAAAG ATTTAGTAAG TTCTTACAAT CATGATTTTT TCACTTTTCA TAAAGATAAA AAAATTACTA TTTTGATAAA AAATGAAGCT TTGTTTAAAG CTTTAAATTT ACAAGAATTT TCAAATATTA AATTAAAAAT ATCTCAAGAA AGAATCAATC TAATCGCTCA AGATGAGCTT GTTATTTCTT TAAATAAAAA AGAAAAAAGT AAAAGAATTA GAAAGGCAAG TTTGGTAATA GATGAGCTTA GAGTCGGGGA TTTTGTTGTA CATGAAGATT ATGGTATAGC TAAATTTTTA GGTCTTGAGA TTATTATAAT TGCAGGAGCA AAAAAAGAAT TTGTAGCTCT TGGGTATTTA AATAATGATA AGCTTTTATT GCCTGTTGAA AATTTGTATA TGATTGATAA ATATATCGGC GCAAGTGGTG GTGTGCCTTT GCTTGATAAG CTTGGAAAAG GAAGTTTTCT AAAAATCAAA GAAAGATTAA AAGAAAAATT ATTTGCCATT GCTTCAAATA TAGTTTCTTT AGCAGCAGCT AGAGCTTTGA TAAAAGCAAA AGAATTAAAA ATTTCTCAAG AATTACAAGA TGAATTTATC AATAAGGCGG GATTTTTTTA CACTAAAGAT CAAAGTCAAG TTTGTCAAGA AATCACTCAA GATTTAAAAA GTTCTCAAGT AATGGATAGG CTTTTAAGTG GTGATGTGGG CTTTGGTAAA ACTGAAATTG CAATGAATGC TATATTTACT TGTGTAAAAA GTGGCTATAC GGCTTTGTTT TTTGTGCCAA CTACTTTACT TTCAGCCCAG CATTTTAAAA CCTTAAAAAA AAGATTTGAT CCATTTAATA TAGAAGTTTT TAAGCTCGAT CGCTTTACTA GTGCCAAAGA AAAAAAACAA ATTTTGGCAT TTTTAAAAGA AAATAAGCCT TGTGTAGTGG TTGGAACGCA TTCTCTTTTA GGGGTTGAGT GTGAAAATTT AGGTTTAGTT GTGATAGATG AGGAGCATAA ATTTGGTGTA AAACAAAAAG AAAAACTCAA AGAATTAAGT AAAAACTCCC ATATTTTATC TATGTCAGCA ACGCCTATAC CAAGAAGCTT AAATCAAGCC CTTAGTTCTT TAAAATCATA CAGCATCTTA CAAACTCCAC CTGAGGATCG TTTAGATGTA AGAACTTTTG TAAGAGAAAG TAATGATGCT TTGATTAAAG AAGCTATTTC TAGAGAATTA AGAAGAGCAG GACAAATTTT TTATATACAC AATCATATAG CAAGTATTGA TGGGTGTAAA AAATACCTTT TAGATTTATT TCCGAATTTA AAAATTTTGA TTTTACATTC AAAAATTGAT GCAAAAACTA CAGAAGAGCA AATGCTGAAA TTTGAAAATA AAGAATATGA TTTGTTACTT TGTACTTCTA TAGTTGAAAG TGGTATTGAT CTTGCAAATG CAAATACTAT CATAGTAGAA AATTCAGATC GTTTTGGTAT GGCTGATTTA CATCAACTTA GAGGACGAGT GGGGCGTAGC TTTCAGCAAG GATATTGTTA TTTTTTAATT GAAGATAAAG AAAAAATCAC AAAAGATTCT CTAAAAAGAC TTACAAGTTT AGAAAGCAAT TCTTATTTGG GTTCAGGAAG CGTGCTTGCT TATCATGATT TAGAAATTCG TGGGGGTGGA AATTTATTAG GTGTGGATCA AAGTGGGCAT ATAGAGCAAA TTGGCTATAG CTTGTATCTT AAAATGCTTG AAGATGAGAT TAATAAATTA AGCAAAAAAG AAGAAATTAA AGAGAAAAAA ATAGATTTAA AATTAAATAT TAATGCTTTT TTAAATAGTG AATATATTAG CGAGGATCGC TTGAGGTTAG AGCTTTATAG AAGACTTAGT AAATGCATGA GCGTAAATGA AGTATATGAA ATAGAAAGTG AGATGAATGA TCGCTTTGGC AAGCCTGATA TTTTCACTAA GCAATTTTTA GACCTAATTA TCATAAAAAT TTTAGCTAGC AAGCATTATA AACTAGTGAG CAATTATGAG CAAAATATTT GTTTTGTAAA AGATGATGAT AGTAAAGAAG TTATAAAAGC AAAAAGTAAA GATGATGATG ATGTGATTGA GGCTGTGTTG ATGCATTTAA GAAAGAGTGA AAAAGTATGA
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Protein sequence | MQAKLYEYLL SNKAELIVCE NDKEADELAQ VCLFLNLKTF VLPDFRAEFG SDLRSFSKEL FEICKVLNAY HKEDENKILI SPIKTILQKL PGKKHLKNII LKRNSLLALE KFKEEILHSG YEFVDIVQDK GEISIRGDII DIFAINEEQP FRILLFSDEI ESIRYFDIHT QKSIPNELSK IEICPFLNAF NQEEYENLQE KIQNFQSQSI INDVNSLGFW CIDDFCDYSD LNFVSIKKFD INDFEEDISK INQNILPEPR FYKDLVSSYN HDFFTFHKDK KITILIKNEA LFKALNLQEF SNIKLKISQE RINLIAQDEL VISLNKKEKS KRIRKASLVI DELRVGDFVV HEDYGIAKFL GLEIIIIAGA KKEFVALGYL NNDKLLLPVE NLYMIDKYIG ASGGVPLLDK LGKGSFLKIK ERLKEKLFAI ASNIVSLAAA RALIKAKELK ISQELQDEFI NKAGFFYTKD QSQVCQEITQ DLKSSQVMDR LLSGDVGFGK TEIAMNAIFT CVKSGYTALF FVPTTLLSAQ HFKTLKKRFD PFNIEVFKLD RFTSAKEKKQ ILAFLKENKP CVVVGTHSLL GVECENLGLV VIDEEHKFGV KQKEKLKELS KNSHILSMSA TPIPRSLNQA LSSLKSYSIL QTPPEDRLDV RTFVRESNDA LIKEAISREL RRAGQIFYIH NHIASIDGCK KYLLDLFPNL KILILHSKID AKTTEEQMLK FENKEYDLLL CTSIVESGID LANANTIIVE NSDRFGMADL HQLRGRVGRS FQQGYCYFLI EDKEKITKDS LKRLTSLESN SYLGSGSVLA YHDLEIRGGG NLLGVDQSGH IEQIGYSLYL KMLEDEINKL SKKEEIKEKK IDLKLNINAF LNSEYISEDR LRLELYRRLS KCMSVNEVYE IESEMNDRFG KPDIFTKQFL DLIIIKILAS KHYKLVSNYE QNICFVKDDD SKEVIKAKSK DDDDVIEAVL MHLRKSEKV
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