Gene Cla_1021 details

Gene Information

• Locus tag: Cla_1021
• Symbol: rpoD
• ID: 7410756
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter lari RM2100
• Kingdom: Bacteria
• Replicon accession: NC_012039
• Strand: +
• Start bp: 973422
• End bp: 975299
• Gene Length: 1878 bp
• Protein Length: 625 aa
• Translation table: 11
• GC content: 29%
• IMG OID: 643718148
• Product: RNA polymerase sigma factor RpoD
• Protein accession: YP_002575595
• Protein GI: 222824021
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 40
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTAATG AAACCAATGT TTTAGAAGAA CTTTTCAAAG AAAATTCCAA AGATTATATC 
ACATATGAAA AACTTGTCAA GTATTTTGCA AAGCTTCCAA ATGTAACAAG TGCAAAAAAA 
ATCCGCGATT TAATGGATAA ACATAAAGTT GAATTAATTT CTTCAGCTGA AATTGCTAAA 
AAAAGAAATT TAGAAGAAGC AAAAAAATTA CAAGAAGAAA AACAAAAATT ACAAGATACG 
AGTTTAGAAA ATGAATTTGA TTTAGCCAAT GAAAATGATT TGTTAGAATG GAGCAGATCA 
GACTCTCCCG TTAGAATGTA TTTAAGAGAA ATGGGGCAAA TAGCTCTTTT AAACAAAGAT 
GAGGAAGTTG AAATTTCTAA AAAAATCGAA CTTGGTGAAG ATATCATTAT AGATGCATTT 
TGCTCGGTTC CTTATTTGAT TGATTTTATA CTTGATTACA AAGAGCCTCT TATAAACAGA 
GAAAGAAGAG TAAAAGAATT ATTTAAAAGT TTTGAAGATG ATGATAAAAA CGATGATGAT 
AAAAACGATG ATGAAATAGA CTCTGAAGAA GAAAATGAAA ACGAAGAAAA TGAAAATTCT 
AACGATAAAA AAATTAAAAA AACAAGCAAA AAAGAAGACG AAAGAACCTT AAAAGTCATA 
GAAAGCTTTA AGGCTTTAGA AAAAGCGAAA AAAGAATGGC TTAAGACTAT ATCTACTATT 
AATGCAGAAA ATAACGAAGA TGAATTGTTG AATAAATTAA TCATAGCTTT TAAGAAAAAT 
ATATTAAAAG AAAAACTCAT GGATTTAGGT CCTACTTCAA AATTAATATC TGAAATAGTA 
AAATCCATGG AAACAGCATT AAAAAGCGAT GAGGAATTTG ACAAAGAATT AAAACGCTTA 
GAATATCGTT TGCCAATGTT TTCAGATGAG TTAAAACAAA GACATGCAGA TATTTTAAAA 
GATATCACAA AACTTAGTAA AGAAGAAATT GCTGAACGCG CACTAGAAAC AACTATGGTT 
AGTACTTATA TGGAGATTAA AAAACTTATT CAAACCAAAG AAGCTAGTCA AAATTCATTT 
GATTTAGAAA AAGATCAATT AAAAGAAATT CTAGAGCAAA TCAAACGCGG TAAGAAAATC 
TCAGATGAAG CAAAAACTAG AATGGCTAAA TCAAATTTAC GCTTGGTTGT AAGCATTGCT 
AAAAGATATA CTAACCGTGG ATTACCATTT TTAGATTTAA TCCAAGAAGG CAATATAGGC 
CTTATGAAAG CAGTAGATAA ATTTGAATAC AAACGCGGTT ATAAGTTTTC AACCTATGCT 
ACTTGGTGGA TTAGACAAGC TATATCAAGA GCGATTGCTG ATCAAGCAAG AACTATAAGA 
ATTCCTATCC ATATGATAGA AACTATTAAT CAAATCAATA AAATTATTCG TGAATACTTA 
CAAAAAGAAG GTAAAGAGCC TGATGTAAGC ATTATTGCTA AAGAAGTAGG ACTTAGCGTA 
GATAAGGTTA AGCAAGTTAT TAAAATTACT AAAGAGCCAA TATCACTAGA AGCACCTATT 
AGCAATGAAG ATGATGGTAA ATTTGGAGAT TTTGTAGAAG ATAGAACTTC AATTTCTCCT 
ATGGATCATA TACTAAAAGA TGATTTAAAA GAACAAATTG ATGAAGTTTT AGATCAGCTT 
AATGATAGAG AAAAAGCTGT TATTAGAATG CGTTTTGGCT TAATGGATGA TGAAAGTGAT 
AGAACTTTAG AAGAAATCGG TAAAGAATTA AATGTAACAA GAGAAAGAGT TAGACAAATA 
GAAAGCTCAG CTATTAAAAA ATTAAAACAT CCAAAAGTTG GCAGAAAACT TAAAAATTAC 
ATAGAAGGTT GGAAGTAA 

 

Protein sequence

MANETNVLEE LFKENSKDYI TYEKLVKYFA KLPNVTSAKK IRDLMDKHKV ELISSAEIAK 
KRNLEEAKKL QEEKQKLQDT SLENEFDLAN ENDLLEWSRS DSPVRMYLRE MGQIALLNKD 
EEVEISKKIE LGEDIIIDAF CSVPYLIDFI LDYKEPLINR ERRVKELFKS FEDDDKNDDD 
KNDDEIDSEE ENENEENENS NDKKIKKTSK KEDERTLKVI ESFKALEKAK KEWLKTISTI 
NAENNEDELL NKLIIAFKKN ILKEKLMDLG PTSKLISEIV KSMETALKSD EEFDKELKRL 
EYRLPMFSDE LKQRHADILK DITKLSKEEI AERALETTMV STYMEIKKLI QTKEASQNSF 
DLEKDQLKEI LEQIKRGKKI SDEAKTRMAK SNLRLVVSIA KRYTNRGLPF LDLIQEGNIG 
LMKAVDKFEY KRGYKFSTYA TWWIRQAISR AIADQARTIR IPIHMIETIN QINKIIREYL 
QKEGKEPDVS IIAKEVGLSV DKVKQVIKIT KEPISLEAPI SNEDDGKFGD FVEDRTSISP 
MDHILKDDLK EQIDEVLDQL NDREKAVIRM RFGLMDDESD RTLEEIGKEL NVTRERVRQI 
ESSAIKKLKH PKVGRKLKNY IEGWK