| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_3225 |
|---|
| Symbol | |
|---|
| ID | 7312465 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | - |
|---|
| Start bp | 3761409 |
|---|
| End bp | 3762344 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 643610127 |
|---|
| Product | ribokinase |
|---|
| Protein accession | YP_002507495 |
|---|
| Protein GI | 220930586 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0524] Sugar kinases, ribokinase family |
|---|
| TIGRFAM ID | [TIGR02152] ribokinase
[TIGR02198] rfaE bifunctional protein, domain I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.195342 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGGGCA AAATATTAGT TATAGGAAGT CTTAATATGG ACTTAGTTGT TAATGTAAAA
CATATGCCGC AAATTGGAGA AACATTGTTG GCAGATAGAT TGGAATTTAT ACCGGGAGGG
AAAGGTGCTA ATCAGGCATA TGCTTTAGGA AAGCTGGGGG CAGATGTAAC AATGCTGGGT
GCTGTAGGAA ATGATTCCTA TGGTGATATT CAAATAGATG GTTTAAAGGC TGTGGGCGTA
GATACAACTC ACATTGCACG AATTAATGGC GTTAATACAG GCATAGCTCT AATAAATGTC
AATGAGCATG GAGACAACAG TATAATAGTT GTACAAGGTG CCAACAAATA TGTAAGTAAG
GAATATATTG ATAGAAATCT TAAAGTAATT GAAGAAAGCG ATATAGTCAT TTTTCAGTTG
GAAATACCTA TTGAAACTGT AACATATGCA GCAAAGAAGG CGAAAGAGCT TGGGAAAACA
GTTATACTTG ACCCTGCTCC GGCACCGGAT GATCTACCGG CAGAACTTCT TTCAAACGTT
GATATCATCA AACCCAATGA AACAGAATTG GTTAAACTCA CAGGAATAGA AGAGGTTGAT
AGCTGTATAA GTAAAGCTGT CGATTCAATA AAAAAGCAAG GTGTTAAAAC TGTAATAGTA
ACTCTTGGAG GTAAAGGTTC TTTTGTTTCG GCTCAAAATG ACGTTATAAA GTATATCAGT
ACTCAAGATG TAAAGGTAAT AGATACTACC GCAGCAGGTG ACAGCTTTAT TGCTTCTATG
GCACTGTACC TATCAAAAGG AAAAGATATC ATATCAGCAG TCGAATTTGC AAATAATGTG
GCTTCTATTT CCGTAACCAG AAAAGGAGCT CAGTCATCAA TGCCGTCTAT GGAAGAGGTT
GAGAAATATA TATCAGAGAT GGGTTCAGCA AAATAA
|
|---|
| Protein sequence | MMGKILVIGS LNMDLVVNVK HMPQIGETLL ADRLEFIPGG KGANQAYALG KLGADVTMLG
AVGNDSYGDI QIDGLKAVGV DTTHIARING VNTGIALINV NEHGDNSIIV VQGANKYVSK
EYIDRNLKVI EESDIVIFQL EIPIETVTYA AKKAKELGKT VILDPAPAPD DLPAELLSNV
DIIKPNETEL VKLTGIEEVD SCISKAVDSI KKQGVKTVIV TLGGKGSFVS AQNDVIKYIS
TQDVKVIDTT AAGDSFIASM ALYLSKGKDI ISAVEFANNV ASISVTRKGA QSSMPSMEEV
EKYISEMGSA K
|
|---|
| |