| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ccel_3127 |
|---|
| Symbol | |
|---|
| ID | 7311721 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium cellulolyticum H10 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011898 |
|---|
| Strand | - |
|---|
| Start bp | 3663030 |
|---|
| End bp | 3664862 |
|---|
| Gene Length | 1833 bp |
|---|
| Protein Length | 610 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 643610030 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002507398 |
|---|
| Protein GI | 220930489 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAGAA AAAATACTGA AGAAATACCT ATAAATGGAG CATTATTAAA TAGCATTACG
CCTATTGGTA TGGAATTTAA GCAGAACACA ATAAATGTAG GTGAAAGCAT GGGGAGGGTA
TACGGTATAG TCAAGTATCC TCAGTCTGCT GACTACGGTT GGCTGTCAAA ACTCACCAAT
ATACCCTCAA CTGTAGCCAG TATCACATTT ACACCCGTTG ATGATTCTGT TTTTCTGGAA
AGCCTGTCAA ATACAATAAA ACAAAAGAGA GGTGAATGTG AGAGTGCAAA GGATGCATTA
ACAGCCTCAA GGGCAAAGCG TGCAGCAGAT GATGCTGAAA AAATGATGAT ACAGGTAGAC
CAACATGGTG AGAAGATAGG TGCTATGAGT TTGCTTGTGG CACCGCTGAC ACGGGATGAG
AAGCTTCTCA AAAAAGTATG TCAGAAAGTA GAGAGTGCAA TAGCCGTTGC CAAGTGCAAA
GGAAGGGTTT TATCCAGTCT CCAGAAGGAG AGCTTTAAAC AATTATCACC TTTTTATGCA
TCAAACGAAC AGATAGAGCG GATTACTCAA AGAATACTGC CTTTATCCAG TTTCATAGGT
GGCTTTCCAT TTGCATCTTC TGGACTGAAT GACGGACAGG GGTATTATTT GGCAAAGGAT
GCTTCAGGGG GATTGGTTGT TGTAGACCCG TGGATGCGTG GAGGTGATAG AACAAATTCC
TGTATGACAA TAATGGGTGT CGGCGGAGTC GGCAAAAGTA CTGCTATAAA ACATATTATC
ATGGCGGAGT ATATGCGTGG AACTAAGATA ATCATTATTG ATCCGGAGTC AGAATATAAG
GAACTTACAC GAAATCTGCA GGGCGACTGG CTCAACTGCG GCGGAGGAAT CAAAGGAAGA
CTGAATCCTT TGCAGATAAG GCAGGTTCCC AAAGACGATG AGGATGAAGA CGGCGAAAGG
TTATACGAAG ATGAAGGTAA CGGTATGGGA GCTTTGGCTC TACATATGAA AAGCCTTGAA
ATATTCTTTA AACTATACAA GCCTTCATTT AACGACAAAC ATATGGCACT GATAAAAATT
TGCCTTATTG AAATGTACGA AAAATTCGGC ATAACCTGGG ATACAGACGT AACGAATTTA
AAAAATGAGG ACTATCCTAT ATTCACTGAT CTCAATGAAA TTATTGAAGA GAAAAAAAGC
AAAGAAACAG AACCCAATAT AAAAGCCTTG TATGTAGACA TATCCTTACT TTTACATGAC
CTTATTTTTG GATCTGACCA ATTTCTATGG AACGGACATA CAAGCATAGA CACGAAAACT
AGATGTGTGT GTCTTGATAC ACATGATCTT CAGGATACCT CTGATAATAT AAAAAGTACC
CAGTACTTTA CAATCCTTCA ATGGGCTTGG GAACAAATGA CCAGAGACAG AGAAGAAAGA
GTGCTTCTGA TTTCAGATGA GGCCTATCTG ATGATTGACC ACAGAGTACC GCAGTCACTG
ATATTCCTTA GAAATGCTGT AAAAAGAGCC AGAAAATATG AAGCAGCCAT TGCAATAATC
TCGCATTCAG TAGTAGATTT CCTTGATCCT AGTGTTAAAA TGTACGGACA GGCGTTACTT
GATATACCCT GCATAAAAAT CCTGATGGGT ACTGACGGTA AAAACCTTCA GGAAACCAAG
GAACTGTACA AACTTACGGA AGCCGAAGAA GAACTTTTAG CAGCAAAACG AAGAAAAATA
GCACTATTAA TCATTGGTTC AAAACGCCTT CAGATAGAAT TTGACTTGCC GGAATATAAA
ATGAAATATT TCGGAAAAGC CGGAGGAAAG TAG
|
|---|
| Protein sequence | MSRKNTEEIP INGALLNSIT PIGMEFKQNT INVGESMGRV YGIVKYPQSA DYGWLSKLTN
IPSTVASITF TPVDDSVFLE SLSNTIKQKR GECESAKDAL TASRAKRAAD DAEKMMIQVD
QHGEKIGAMS LLVAPLTRDE KLLKKVCQKV ESAIAVAKCK GRVLSSLQKE SFKQLSPFYA
SNEQIERITQ RILPLSSFIG GFPFASSGLN DGQGYYLAKD ASGGLVVVDP WMRGGDRTNS
CMTIMGVGGV GKSTAIKHII MAEYMRGTKI IIIDPESEYK ELTRNLQGDW LNCGGGIKGR
LNPLQIRQVP KDDEDEDGER LYEDEGNGMG ALALHMKSLE IFFKLYKPSF NDKHMALIKI
CLIEMYEKFG ITWDTDVTNL KNEDYPIFTD LNEIIEEKKS KETEPNIKAL YVDISLLLHD
LIFGSDQFLW NGHTSIDTKT RCVCLDTHDL QDTSDNIKST QYFTILQWAW EQMTRDREER
VLLISDEAYL MIDHRVPQSL IFLRNAVKRA RKYEAAIAII SHSVVDFLDP SVKMYGQALL
DIPCIKILMG TDGKNLQETK ELYKLTEAEE ELLAAKRRKI ALLIIGSKRL QIEFDLPEYK
MKYFGKAGGK
|
|---|
| |