Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caul_4265 |
Symbol | |
ID | 5901726 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Caulobacter sp. K31 |
Kingdom | Bacteria |
Replicon accession | NC_010338 |
Strand | + |
Start bp | 4636092 |
End bp | 4638041 |
Gene Length | 1950 bp |
Protein Length | 649 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641564784 |
Product | RNA polymerase sigma factor RpoD |
Protein accession | YP_001685884 |
Protein GI | 167648221 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.914604 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.695759 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCACGA CGACGACTGA CGGAGCCGAA CCGCCCGAAA CCGGTGGCGG GGATGGCCCC CTGCTCGACC TGACCGACGC CGGCGTCAAG AAGTTCATCA AGCAGGCCAA GGCCCGCGGC TACGTCACCA TGGACGAGCT GAACAAGGTC CTGCCGTCGG AAGAAGTGAC CTCCGAGGCC ATCGAAGACA CCCTCGCCAT GCTGAGCGAG ATGGGCGTCA ACGTGGTCGA GGCCGAAGAA GACGCTGAAA CCTCCGAGGG CGGCGAAGTC GTCGCCCGCG AGGACAACCA GCAGGTCATC ACCAGCGACA AGCCGGCGGC CTATGACCGC ACGGACGATC CCGTGCGCAT GTACCTGCGC GAGATGGGCA GCGTCGAGCT GCTGTCGCGC GAGGGCGAAA TCGCCATCGC CAAGCGCATC GAGGCCGGCC GCGACACCAT GATCCGGGGT CTGTGCGAAA GCGCCCTGAC CTTCGAAGCC ATCATGGTCT GGCGCGAGGA ACTGGGCACC GGCCGCATCC TGCTGCGCGA AGTGATCGAC CTGGAAGGCA CCTACGCCGC CATCAACGGC GTGGCCGCCG CGCCCGCCGC CGACGACGAG CCGGCCGAGC CGTCGGACGA GGAACCCGGC AGCGAACCCA AGGCCGAGGG CGAGGAAGAC GAGGACGATT TCGACGATGG CGCCGGCCCG ACGGTCAGCG CCATGGAAGG CGAACTGCGC GAAGGCGTGA TGGCCATCCT CGACGCGATC GCCAGCGAGT TCGAAACCTT CCGCAAGCTG CAGGACAAGT TGGTCGGCAG CCGCCTGAAG GGCGCGGACC TCTCGGACGC CGACCGCAAG GCCTATGAGG GCCTGTCGAA CACCATCATC CAGCACCTCA AGACGCTGAA GCTGAACAAC AACCGCATCG AGGCGCTGGT CGAGCAGCTC TATGCGATCA ACAAGCGCCT GATCGGCCTG GAAGGCCGGC TGCTGCGCCT GGCCGACAGC TACGGCATCA GCCGCAGCGA GTTCCTCAAG GCCTATTTCG GTTCGGAGCT GAACCCGAAC TGGATCGACC AGGTCAAGGC CATGGGCGTG CGCTGGACCA AGTTCGTCGA GAACGACACC AACTCGGTCG GCGACATCCG TCAGGAAATC GCCGCCCTGG CCACCGAGAC CGGCGTGCCG ATCGACGATT ATCGCCGCAT CGTCCAGACC GTGCAGAAGG GCGAACGCGA GGCCCGGCAG GCCAAGAAGG AGATGGTGGA AGCCAATCTC CGTCTCGTGA TCTCGATCGC CAAGAAGTAC ACCAACCGCG GCCTGCAGTT CCTGGACCTG ATCCAGGAAG GCAATATCGG CCTGATGAAG GCTGTCGATA AGTTCGAATA TCGCCGCGGC TACAAGTTCT CGACCTACGC CACCTGGTGG ATCCGTCAGG CGATCACCCG CTCGATCGCC GACCAGGCGC GGACCATCCG CATCCCGGTG CACATGATCG AGACGATCAA CAAGATCGTC CGCACCAGCC GCCAGATGCT GCACGAGATC GGCCGCGAGC CGACCCCGGA AGAGCTGGCC GAAAAACTGG CCATGCCGCT GGAGAAGGTG CGCAAGGTCC TGAAGATCGC CAAGGAGCCG ATTTCGCTCG AAACCCCGAT CGGGGACGAG GAAGACAGCC ACCTGGGCGA CTTCATCGAG GACAAGAACG CCATCCTGCC GATCGACGCG GCCATCCAGT CCAACCTGCG GGAAACCACC ACCCGCGTGC TGGCCTCGCT GACCCCGCGT GAAGAGCGCG TCCTGCGCAT GCGTTTTGGC ATCGGCATGA ACACCGACCA CACCCTGGAA GAGGTGGGCC AGCAGTTCTC GGTCACCCGC GAACGCATCC GCCAGATCGA GGCCAAGGCC CTGCGCAAGC TCAAGCACCC GAGCCGGTCG CGCAAGCTGC GGTCGTTCCT GGACTCCTAA
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Protein sequence | MSTTTTDGAE PPETGGGDGP LLDLTDAGVK KFIKQAKARG YVTMDELNKV LPSEEVTSEA IEDTLAMLSE MGVNVVEAEE DAETSEGGEV VAREDNQQVI TSDKPAAYDR TDDPVRMYLR EMGSVELLSR EGEIAIAKRI EAGRDTMIRG LCESALTFEA IMVWREELGT GRILLREVID LEGTYAAING VAAAPAADDE PAEPSDEEPG SEPKAEGEED EDDFDDGAGP TVSAMEGELR EGVMAILDAI ASEFETFRKL QDKLVGSRLK GADLSDADRK AYEGLSNTII QHLKTLKLNN NRIEALVEQL YAINKRLIGL EGRLLRLADS YGISRSEFLK AYFGSELNPN WIDQVKAMGV RWTKFVENDT NSVGDIRQEI AALATETGVP IDDYRRIVQT VQKGEREARQ AKKEMVEANL RLVISIAKKY TNRGLQFLDL IQEGNIGLMK AVDKFEYRRG YKFSTYATWW IRQAITRSIA DQARTIRIPV HMIETINKIV RTSRQMLHEI GREPTPEELA EKLAMPLEKV RKVLKIAKEP ISLETPIGDE EDSHLGDFIE DKNAILPIDA AIQSNLRETT TRVLASLTPR EERVLRMRFG IGMNTDHTLE EVGQQFSVTR ERIRQIEAKA LRKLKHPSRS RKLRSFLDS
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