| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cag_1900 |
|---|
| Symbol | |
|---|
| ID | 3747645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium chlorochromatii CaD3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007514 |
|---|
| Strand | - |
|---|
| Start bp | 2418637 |
|---|
| End bp | 2419932 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637774437 |
|---|
| Product | 3-isopropylmalate dehydratase |
|---|
| Protein accession | YP_380193 |
|---|
| Protein GI | 78189855 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0065] 3-isopropylmalate dehydratase large subunit |
|---|
| TIGRFAM ID | [TIGR01343] homoaconitate hydratase family protein
[TIGR02086] 3-isopropylmalate dehydratase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACAAA CAATAACCCA GAAAATTTTT GCAAAATCAG CAAAACGCCC TTTTGTTGAT
CCCGGCGAAA GTGTTTGGCT TAATGTGGAT GTTCTCCTCA CACATGACGT GTGCGGACCG
CCCACGATTG ATATTTTTAA AGAGAAATTT GGCTCCAACG CTAAAGTGTG GGATCCCGAA
AAAGTTATTA TTCTGCCTGA TCACTACATC TTTACTGCCA ACGAACATGC GCACCGCAAC
ATTGATTTGC TGCGCCAATT TGCTAAAGAG CAAGGCTTAC CTCATTACTA CGATGTTGGC
ACCGATCGTT ATAAAGGTGT GTGCCATGTA GCACTTGCTG AAGAGGGCTT TAACCTTCCC
GGTACCGTGC TTTTTGGTAC CGACTCACAC ACCTGCACCT CTGGCGCTTT TGGCATGTTT
GGTACCGGCA TTGGCAATAC CGATGCGGCA TTTATTCTTG GTACCGGCAA ATTGTGGGAA
AAAGTACCCG AATCAATGAA GTTCACCTTT GAGGGTGAAA TGCCAGCCTA TTTGACAGCT
AAAGATCTGA TTTTGCAGAT TCTTGGCGAC ATCACCACCG ATGGTGCAAC CTATCGCGCT
ATGGAGTTTG ATGGCGAAGC TATTTTCTCT CTGCCAATGG AAGAGCGCAT GACGCTTACC
AACATGGCAA TTGAAGCGGG TGGCATGAAT GGCATTATTG CAGCCGATAA CATTGCAGAA
GAGTATGTAA AGGCACGTAC CAAAAAGCCT TACGAGATTT TCCAAAGCGA TCCTGACGCA
AAGTACCATA GCACCTATCG CTATAACGTG CGTGATTTGG AGCCTGTAGT AGCTCAACCG
CATAGCCCCG ATAACCGTGC AACCGTGCGT AGCGTAGCTG GCACAAAAAT CACCAAATCG
TACATTGGCT CATGCACGGG TGGCAAGCTA AGCGACTTTA TGATGGCAGC TAAAATCCTA
AAAGGGCAGA AAGTTACCGT TACCACAACT ATTGTTCCTG CAACTACTTT AGTAGCTCGT
AGCCTTGAAA CGGAGCAATA CGATGGCAAA AGCTTAAAGC AAATTTTTGA AGAAGCTGGC
TGCAACGTTG CTTTACCATC GTGCGCTGCC TGTCTTGGCG GTCCAGCTGA CACCGTTGGT
CGTTCGGTGG ATAATGACCT TGTGGTTTCA ACAACGAACC GCAACTTCCC TGGACGCATG
GGTAGCAAAC ATGCAGGCGT TTATCTTGCT TCACCACTTA CGGCAGCGGC ATCAGCAATT
ACCGGCAAAC TTACCGATCC GAGAGATTTT CTCTGA
|
|---|
| Protein sequence | MAQTITQKIF AKSAKRPFVD PGESVWLNVD VLLTHDVCGP PTIDIFKEKF GSNAKVWDPE
KVIILPDHYI FTANEHAHRN IDLLRQFAKE QGLPHYYDVG TDRYKGVCHV ALAEEGFNLP
GTVLFGTDSH TCTSGAFGMF GTGIGNTDAA FILGTGKLWE KVPESMKFTF EGEMPAYLTA
KDLILQILGD ITTDGATYRA MEFDGEAIFS LPMEERMTLT NMAIEAGGMN GIIAADNIAE
EYVKARTKKP YEIFQSDPDA KYHSTYRYNV RDLEPVVAQP HSPDNRATVR SVAGTKITKS
YIGSCTGGKL SDFMMAAKIL KGQKVTVTTT IVPATTLVAR SLETEQYDGK SLKQIFEEAG
CNVALPSCAA CLGGPADTVG RSVDNDLVVS TTNRNFPGRM GSKHAGVYLA SPLTAAASAI
TGKLTDPRDF L
|
|---|
| |