| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cag_1888 |
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| Symbol | |
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| ID | 3746787 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium chlorochromatii CaD3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007514 |
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| Strand | - |
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| Start bp | 2399583 |
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| End bp | 2401100 |
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| Gene Length | 1518 bp |
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| Protein Length | 505 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637774425 |
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| Product | carotenoid isomerase, putative |
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| Protein accession | YP_380181 |
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| Protein GI | 78189843 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
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| TIGRFAM ID | [TIGR02730] carotene isomerase
[TIGR02734] phytoene desaturase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCAGATA AAAGAGCTGA CGTTATTGTG ATTGGGGCAG GCATTGGTGG CTTAACTACC
GCCGCCTTGC TTCAAGAGAG GGGAATTCAA ACCGTGGTGT TTGAAAAAAA TCGCTATGCT
GGTGGCAGTT GCTCGGCGTT TCGCCGCGAA GGCTACACCT TTGATGCTGG GGCATCGGTT
TTTTATGGTT TTGGCGATAA TGCTTCAAGC GGAACGCTTA ATTTACATAC TCGCATTTTT
CGCAAGTTTG GGATTAAGGT GGCAACGGTG CCCGATTCTG TGCAAATTCA CTACCATCTT
CCCAATGGAT TTTCGGTAGC CGCAAGCCAT AATCGGCAGC AATTTTTAGC TGCGCTGAAA
GCCCGTTTTC CGCATGAAGC TGAGGGAATT GAGCGCTTTT ACGAGGAGCT AACAGCCGTC
TGCGATATTT TACGCGCTAT GCCTGCTGGC TCGTTAGAAG ATGTTGTTCA CTTAGCCTCA
GTTGGCGCTG CTCATCCGTT AAAAACTGTT GCATTGGCGC TGAAAAGTTT TCGCTCCATG
GGCAAAACAG CTCGCCGCTA CATTCGAGAT GAAGAGCTGC TCCGCTTTAT TGACATTGAA
GCTTATTCGT GGGCGGTGCA GGATGCTACG GCAACACCGC TTGTGAATGC AGGCATCTGC
CTTGCCGATC GCCATTATGG TGGCATTAAC TATCCCATCG GCGGTTCAGG CGCAATTCCC
GAAGGACTTT GCAAAGCCTT TCAGCAACAC GGTGGTACGC TTAACTATCA AGCTGAGGTG
GTAGAAATTC TCTTGGAAGC GGGTGAAGCG CGAGGTGTGC GGTTAGCGGA TGGCACGGTG
CATTATGCCA AAGTGGTTAT TAGTAATGCA ACCATTTGGG ACACCTTTAA TCGGATGGTA
AAGGATGTGC GTTACCGTGT TGAGGAGGAT CGCTTTTTGC GGGCACCAAG TTGGTTTCAG
CTTTTTCTTG GTGTGGATAG CCGTGTAATT CCAGAAGGCT TTAACGTTCA CCATATTATT
GTGGATAATT GGCAAAGTTA CCAGCAGCTT GGCGGCACTC TTTATTTTTC GGCTCCCACC
ATTCTTGATC CATCATTAGC ACCTGCAGGG CATCATATTA TTCATGCTTT TGTTACCGAT
GAGGTTGCAT GTTGGAGCAA CTACGAGCGT GGTAGTAGCG CCTACCGTGC AGCCAAAGAG
GAAAAAGCAG CCGCTCTTAT TGCTCGCATT GAGCGCATTG TGCCTGAGCT TTCGTCGGCG
ATTAAGCTGA AAGTGCTTGC TACGCCGCTC ACGCATGAAC GCTACCTCAA TCGTTATAAA
GGCTCGTATG GAGCACTGTT AAAGCCCGGT CAAACCATTT TGCAAAAGCC ACAAAACACA
ACGCCCGTGC GCAATTTATA TGCGGTGGGC GATAGTACTT TTCCCGGGCA GGGAGTAATT
GCGGTTACCT ATTCGGGTGT TTCGTGCGCT TCGTATGTGG CGCGCCGTTT TGGCAAACCG
CTTGAGGAGT TGGGGTAG
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| Protein sequence | MADKRADVIV IGAGIGGLTT AALLQERGIQ TVVFEKNRYA GGSCSAFRRE GYTFDAGASV
FYGFGDNASS GTLNLHTRIF RKFGIKVATV PDSVQIHYHL PNGFSVAASH NRQQFLAALK
ARFPHEAEGI ERFYEELTAV CDILRAMPAG SLEDVVHLAS VGAAHPLKTV ALALKSFRSM
GKTARRYIRD EELLRFIDIE AYSWAVQDAT ATPLVNAGIC LADRHYGGIN YPIGGSGAIP
EGLCKAFQQH GGTLNYQAEV VEILLEAGEA RGVRLADGTV HYAKVVISNA TIWDTFNRMV
KDVRYRVEED RFLRAPSWFQ LFLGVDSRVI PEGFNVHHII VDNWQSYQQL GGTLYFSAPT
ILDPSLAPAG HHIIHAFVTD EVACWSNYER GSSAYRAAKE EKAAALIARI ERIVPELSSA
IKLKVLATPL THERYLNRYK GSYGALLKPG QTILQKPQNT TPVRNLYAVG DSTFPGQGVI
AVTYSGVSCA SYVARRFGKP LEELG
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