Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cag_0548 |
Symbol | |
ID | 3747052 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium chlorochromatii CaD3 |
Kingdom | Bacteria |
Replicon accession | NC_007514 |
Strand | - |
Start bp | 652586 |
End bp | 654568 |
Gene Length | 1983 bp |
Protein Length | 660 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637773082 |
Product | DNA primase |
Protein accession | YP_378864 |
Protein GI | 78188526 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0358] DNA primase (bacterial type) |
TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00859761 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCATGA TTCCGCCCGC AATTATTGAT GAGGTTCGCC AAGCTGCCGA CATTGTTGAT GTTGTTTCGG ATTATGTTGC CCTGCAACCT TCGGGGCGTA ACTATAAAGC CCTTTCTCCC TTTACGCAAG AAAAAACTCC CTCCTTTATT GTTTCCCCCG ATAAGCAAAT TTACAAGTGC TTTTCAACGG GCAAAGCGGG CAATGTTTTT TCTTTTATTA TGGAGATGGA AAAAGTCCCC TTTATGGAGG CGCTGAAGTT AGTAGCGCAA CGGGCGGGGA TTGATATTAG CCGCTATACG GAGCCAAAAG GAAAGCAGGA AGGAGAGGAG GAGCAAGGAA GTGGGGCGGC TTTGCGTTGG GCAGCTCGCA TGTTTCATAG TTTGCTGAAG CAACCCGCTG GTGCTGAAGG ATGGCGTTAT TTTGTGGAAG AGCGGGGATT GCGGGAGGAA ACCATCAACC GTTTTGGTTT GGGCTATGCG CCTGAAAGCT GGGATTTTTT ATTGCGTGAA GCAAGGCGCG AGGGTATTAA GAGCGAGCAG TTGGTTGAAC TTGGGTTGCT TGTTAGCCAT CGCGAAAAAC AGTCGCTGTA TGACAGCTTT CGCCACCGAG TAATATTCCC CATATTTTCA CGCGGTGGGC AGGTGGTTGG CTTCGGTGGT CGGGCGTTAG TAAGCGATGA GCGTTCGCCG AAGTACCTCA ATTCGCCCGA AAGCGCCATG TTTGCAAAGT CGAAGCTCCT CTATGGCTTA CATTTTGCAA AAAATGAAAT TCGCCGCCAA GAGCGCGCTA TTCTTGTAGA AGGGTATATG GATGTTTTAG CGCTGCATCA AGCAGGGCTT ACCAATGCCG TTGCCTCGTG CGGTACAGCG CTGACGCGCT ATCAAGCAAA AATGTTGCGC CACTATAGCG AGCATGTGCT CTTTGTTTAT GATGCCGATA AAGCAGGGCA GAAGTCTATG ATGAGCGGCA TTGATATTCT TGTGAGCGAG CAAATGGTGC CTCAAGTGCT TATGCTGCCC GAAGGCGACG ACCCCGATAG CTTTGTGCGG CGCGAAGGAC GACAGGGATT TTTGCAATAC GCCGAAAGCC ACACTATGGG CTTTCAAGAT TTTCAGCTTG CTTTTTTTGA AGCCGCAGGA GCATTTTCTA CCCCTGAGCA AAAAGCTGAA GCGCTTCGAG TGATGGTACG AACCATTGCG CTCATCCCTA AACGTGCGCA ACGGGAATTG TATGCGCAAG AGCTTTCAAA AAAAGTAGGG TTAACCGTTA CAGCACTTCG AGAGTTGTTG GGAAATGCTA CCAGCGCTGT TGCCAAGCAA CAATCGTGCA CGCCGAGCAA AGCCTCCGCA ACAGCACCCA CATCCTCGTC CGCCACAAAT GCTACAAGCG CTCCAACTAT TCCACATGCT CCCAATCTCC CTAATGCCCA AGCGCTGCCA CCACTCTCCG TGCTTGAAAA AACCTTTCTT AAAGCTCTGC TTGAAAGCAC GCAATATGGT ACTGCCGTAC TGGGTTTTGC AGCCTCGCAT CAAAGTATGT TAGAGCTTCG TCATCCCTTA GCGCAAGAAA TTTTTGCTCA CCTTATCCAC CGCTACCACA ACATAGCCGC CGACCCAGAA GCCACTATTG ATATGGTTTC TGAAATTAGC GCATTCACCA ACCCCGAAAC ACGCGATCTT GCCTCTACCC TTTTGCTTGA TCCTCCCATT AGCCCCAAAT GGCAACAACA AAACGATCTG TTTAGTGAAC AAGCACGCCG CTGTCTTGCT ATGTTTCTTG ACGCATTTAA GAATTTAGTG TTGGAGCCAT TGCTTGACGA AAAAAACAAG CTTATGGAGC AAATTCGTGT TGAGGAAAAT GTGGAGCGTG AAATTGAGCT ATCGAGGCAA AAAATTGTGC TCGATAAAAA AATTCGTGAA GAGAACCGCA GCTTACAGCA AATGATTAAG GCAATTCTTG ATTCAACGCA GCAGGTTGGG TAG
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Protein sequence | MSMIPPAIID EVRQAADIVD VVSDYVALQP SGRNYKALSP FTQEKTPSFI VSPDKQIYKC FSTGKAGNVF SFIMEMEKVP FMEALKLVAQ RAGIDISRYT EPKGKQEGEE EQGSGAALRW AARMFHSLLK QPAGAEGWRY FVEERGLREE TINRFGLGYA PESWDFLLRE ARREGIKSEQ LVELGLLVSH REKQSLYDSF RHRVIFPIFS RGGQVVGFGG RALVSDERSP KYLNSPESAM FAKSKLLYGL HFAKNEIRRQ ERAILVEGYM DVLALHQAGL TNAVASCGTA LTRYQAKMLR HYSEHVLFVY DADKAGQKSM MSGIDILVSE QMVPQVLMLP EGDDPDSFVR REGRQGFLQY AESHTMGFQD FQLAFFEAAG AFSTPEQKAE ALRVMVRTIA LIPKRAQREL YAQELSKKVG LTVTALRELL GNATSAVAKQ QSCTPSKASA TAPTSSSATN ATSAPTIPHA PNLPNAQALP PLSVLEKTFL KALLESTQYG TAVLGFAASH QSMLELRHPL AQEIFAHLIH RYHNIAADPE ATIDMVSEIS AFTNPETRDL ASTLLLDPPI SPKWQQQNDL FSEQARRCLA MFLDAFKNLV LEPLLDEKNK LMEQIRVEEN VEREIELSRQ KIVLDKKIRE ENRSLQQMIK AILDSTQQVG
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