Gene Cag_0026 details

Gene Information

• Locus tag: Cag_0026
• Symbol: secD
• ID: 3746995
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium chlorochromatii CaD3
• Kingdom: Bacteria
• Replicon accession: NC_007514
• Strand: +
• Start bp: 26628
• End bp: 28544
• Gene Length: 1917 bp
• Protein Length: 638 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637772550
• Product: preprotein translocase subunit SecD
• Protein accession: YP_378348
• Protein GI: 78188010
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.943233
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTGCAA GCAACAATTT CTTTTATCTA ATGAAAAATA AACGGTTTAA TCTCCTACTG 
ATTGCCCTCA TTACGTTGCT GTCGTTGTGG TCGCTTTGGC CAACGTGGCG CGATTATTCC 
ATTTCTCAAG AGTTGCAAAA TGCTCGCACT CCAAAGGATA GTGCGGCGGT TGCCGTAAAG 
CATCGGGCTG AGCTTGAGGA GGTGCGTCAA AAAAGTTTAA AGCTTGGGCT TGATTTAAAG 
GGTGGTATGC ACTTGGTGAT GGAGGTGGAT CAAGTGGATT TGTTTGAGCA AAAGGCTTGG 
AATAAGGATG CTACCTTTAC GGCTATTATG CAGTCGGTGC GGGCGCAAGC GCTTGCTCAA 
AGCGATGCTC GTGTTATTGA TCTGTTGGTG CAGGAGTTCA ATAAACGCAA CATTCGTTTA 
AGCCGTTATT TTTACGATAT CCGCAATAGC GATAAGGAAA TTATCGGGAA ACTTGAAAAG 
GAGTCGGAGG AAGCGCTGAG CCGTGCTAAA GAGATTATTC GTAACCGTAT TGATCAATAT 
GGTGTGGCTG AGCCAATGAT TACCACCCAA GGTAGTCGCA AGTTGGTAAT TGAGTTGCCG 
GGTGTGTCGG ATGAAGGGCG TGTGCGTAAT TTGTTGAAGG GGACGGCAAA GCTTGAGTTT 
AAATTGTTGC GTGAGCCTGA ATTGTTGGTG AGGGCGCTTG ATCGCATTAA TTCGGGACTT 
GCTTCGGGTA CAATGGCTAC TTCGTTGGCA CCAACGGTTG CTCCTGATTC AGCGGCATCA 
GCTCAATCTG TTTCAGTTTC AGCTTCGGCA ACACCATCCC TTCCCGCTAA GGCGAATGTG 
GCACCAACTT CTGCGGTGGC GCCTGCTCCT CGTTCGCTGA GTAATTTGAT TGTGCTGATG 
CAAAATGGGA TGGCTTATAC TGAAGAGCGT AACCGTGCGG AAGTAAAGGC GCTTCTTGAG 
CGTGCCGACG TGCAAGCGTT GTTGCCTCCT GATTCTGAGT TGTTGCTTGC GGCAAAGCCT 
GAAGTTGATG CTGAGGGCAA AAAATTCTAT CCACTCTACC TTATCAAGAA AACGCCTGAG 
CTAACAGGTG GCGTTATTAC GGAGGCAAAA GCAACCTTTG GCTCGCAAGG TATTCAGCCT 
GAAGTAACCA TGGCAATGAA CACTGAGGGA ACATCGCGTT GGGCACGTAT TACGGGGGCA 
AATATTGGTA AGCGTATTGC AATTGTGCTG GATGGTGCGG TTTATAGTGC GCCTGTGGTT 
CAATCTAAAA TTCCTAATGG AAACTCGGTT ATTAATGGCA TTGAGAGCCT TGAAGAGGCG 
AAAGACCTTG AAATTGTGTT GAAGGCAGGT GCTCTGCCTG CGCCTGTGCG CATTACCGAA 
GAGCGTAGCG TTGGTCCATC GCTTGGTGCC GATTACATTC GTGCGGGTAT GCTGTCGCTT 
GTGTGGGCGT TTGTAGCGGT GTCGTTTTTT ATGCTGGTTT ACTATCGCCA AGCGGGCATT 
GCTGCCAATA TTGCCCTTAT CCTCAATATT TTAATTGTGC TATCGGTGCT TGCGGGCTTT 
AATGCCTCGC TTTCGTTGCC GGGTATTGCA GGTATTGTGC TCACTATTGG CATGGCGGTT 
GATGCAAACG TGTTGATTTA TGAGCGTGTG CGCGAAGAGC TTGCGGAAGG CAAAAGCATT 
GCGGCGGCAG TGGCACAAGG CTACGATCGT GCTTTTTCTT CAATTCTTGA TTCGCACGTA 
ACCACCTTAG CGGCTGGCTT TTTGCTTTAC ACCTATGGCA TTGGACCTAT TCAAGGTTTT 
GCGGTAACGT TAATGATTGG TACGGCTGCA AGCTTGTTTA CTGCCATTGT GGTAACTCGC 
GAAATTTTCA ATTTTATGCT CTTTAAGGAG AAGCTTTCAA CCAAAAGCTT TGGCTAA 

 

Protein sequence

MFASNNFFYL MKNKRFNLLL IALITLLSLW SLWPTWRDYS ISQELQNART PKDSAAVAVK 
HRAELEEVRQ KSLKLGLDLK GGMHLVMEVD QVDLFEQKAW NKDATFTAIM QSVRAQALAQ 
SDARVIDLLV QEFNKRNIRL SRYFYDIRNS DKEIIGKLEK ESEEALSRAK EIIRNRIDQY 
GVAEPMITTQ GSRKLVIELP GVSDEGRVRN LLKGTAKLEF KLLREPELLV RALDRINSGL 
ASGTMATSLA PTVAPDSAAS AQSVSVSASA TPSLPAKANV APTSAVAPAP RSLSNLIVLM 
QNGMAYTEER NRAEVKALLE RADVQALLPP DSELLLAAKP EVDAEGKKFY PLYLIKKTPE 
LTGGVITEAK ATFGSQGIQP EVTMAMNTEG TSRWARITGA NIGKRIAIVL DGAVYSAPVV 
QSKIPNGNSV INGIESLEEA KDLEIVLKAG ALPAPVRITE ERSVGPSLGA DYIRAGMLSL 
VWAFVAVSFF MLVYYRQAGI AANIALILNI LIVLSVLAGF NASLSLPGIA GIVLTIGMAV 
DANVLIYERV REELAEGKSI AAAVAQGYDR AFSSILDSHV TTLAAGFLLY TYGIGPIQGF 
AVTLMIGTAA SLFTAIVVTR EIFNFMLFKE KLSTKSFG