Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_7862 |
Symbol | |
ID | 8339238 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 9120618 |
End bp | 9125300 |
Gene Length | 4683 bp |
Protein Length | 1560 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 644960945 |
Product | putative sensor with HAMP domain |
Protein accession | YP_003118526 |
Protein GI | 256396962 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.712713 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGGCGGGC CGCCGCCCGG CGGATCCATA TCCGACGCGG CCGCCGGCCG CACCGCGCCC GGAGAGCTTC CGCGCGGGGT TCGGGATGGC GTGCTGCCCG GACAGCGTCC AGTCCCCACG CCCCAGGAGA GCGAGGGCGG CGGCTCCCAC CTGCCTCCGC CCCCGCCGCC GACGGGGCAG GCGAACCGCT TCGCCCCCCG CAACTGGCGC GTCCGGACCC GTCTGGTGGT CCTGGTCATC GTGCCGTTGG TGGCGACGAT CTTCGGCGCC GCGGCCCGCA TCGTGCAGCA GGTCGGCAAC GTGAAGACCT ACGACCACGC CACGACCATG GCCGCCGCGG CCAGCCCGCT GTCGACGCTG ATCGACGCGC TGCAGGACGA GCGCGACATC AGCATCGAGA TGATGGCGTT CCGCGTGCAG CAGAACACCG ACAACTCCAC GCTGACCAAC CTGACCACCT CGATGGCCAC GCAGCGCAAG ATCACCGACC GCGCGACGGC CGAGATGCTG CCGGTGCTGA ACAAGATCGA CGGCTCCTAC CCGGCGGACA CCCTGTCCGC GATCGCCAAC GCCAAGGCGA ACATGACCGG CATCGAGGCT CTGCACACCG CGGTGGACGG CGCGTTCTCC TACCCGGTGA GCGTGTTCGA CCAGTACGAC AAGGTGCTGG ACAGCCTGGA CAACCTCTAC GAGTTCGTCG CCGCCGACGC CGGGGACCAG CAGCTGATCA ACGACGCCCG GTCGCTGGCG GACCTGGGCC GGATGACCGA GACGACCTCG CGCGAGCGCG GATTCCTCAC CGTCCTGGCC GTCAGCTCCA ACCCCAACCA GTCCCAGGAC AACCTGGCCA AGTTGCAGGG CCTGATCTCG GACCTGGCCT CCACCCGCAC CGAGTTCAAG ACCATCGCCA CCACGCAGAT GCAGCAGACG CTGAGCGACA CCGTGGACGT CGGCGAGTCC TACACCGGGG CGAACCAGTA CCTGCAGACG ATCGACGACA AGCTCGCCAA CGGCGGCGCC AGCGATAACG GCGACCAGCT GGTCCCCGGC AGCGTCTACA CGCAGTACAA CTCGCTGCTC GACCGGTACA AGAAGGTCCG CGCCCAGCAG GCGGCCGCGC TGGTCAAGCG AGCCGACTCG CTGTCCAACA GCGCCCGCAA CACCATGTAC GTGAACATCG GCATCATCGT CGGCGTGCTG CTGGTGGTGT CCGTGGCCAC CGCGCTGATC GCGCGATCCC TGGTGCGTCC GCTGCGAGTC CTGCAGAACA CAGCCCTGGA GATCGCCGGC AACCGGCTGC CCGAGATGGT CCGCCGCCTG CGCGACGCCG ACGGCAGCGA ACCGATCGAA CCGATCGCGC CGATCGCCTT GTCCAGCACC GACGAGGTGG GCCAGGTGGC CCGCGCGTTC GACGAGGTGC ACCGCGAGGC GGTCCGGCTG GCGACCGAGC AGGCCATGCT GCGGAACAAC GTCAACGCGA TGTTCACCAA CCTCTCGCGC CGCTCGCAGT CGCTGGTCCA GCGCCAGCTG CGGCTGATCG ACGAGCTGGA GAACGCCGAG CAGGACCCCG ACCAGCTCGC CTCGCTGTTC AAGCTGGACC ACCTCGCGAC CCGTATGCGC CGCAACGGTG AGAACCTGCT GGTCCTCGCC GGTGAGGAGC CCGGGCGCCG CTGGTCCCAG CCGGTCCCGC TGATCGACGT GTTGCGCGCC GCGGCCTCCG AGGTGGAGCA GTACGAGCGG GTCACCCTGC GCGACCTGCC GACCGTCGAG GTCGCCGGCC GCGCCGTGAA CGACGTCGTC CACCTGGTCG CCGAGCTGCT GGAGAACGCG ACCTCGTTCT CCGCCCCGGA GACCAAGGTC TCGGTCACCG GCAACCTGCT GAACACCGGC GGCGTGATGC TGGAGATCGA GGACTCCGGG ATCGGCATGA CCCCGGAGGA GCTGGACGAC TCCAACGAGC GCCTGGCCAA CCCGCCGGTC GTGGACGTCG CCATCTCCCG CCGCATGGGC CTGTTCGTGG TCGGCCGGCT GGCCACCCGG CACGGCATCC AGGTGCGGCT GCGCCGCTCG GCGACCGGCG GTATCACCGC GCTGGTGCTG GTCCCGGCCG CGCTGCTGGC GGGCAACCTG TCCGACGCCC CGGCTGTGGG CGGCAACCGT GCCGGCACCT TCGGCGACAT CGCCGACACC GGCCAGCTGC CCCAGCTGAC CTCCACCGGC CTGCCGCGGC GGCCCGGCGG CGCGGTGCGC GCCGAGCAGC GCGAGCTGCC CTCGCCCGAG GAGCCGCAGG GTCCGCCGAA CCAGGCGCCG GCCTCGCTGC CGCCGTTCGG CGGCGAGCGG GTGCCGACGG CGAGCGCGAA CGACGGAGAC GGCTGGGAGG ACGTGAGCGC GGCGGCACCG CCGTACCGCG GCACCGACGC CACCCCGCCG GGGCTGGCCG ACCTGCTGGC CGAGACCGAG GCGATGTCGC AGGGCGTGAC CCCGATGATC CGCGAGGGCG ACCCGGGCGA TCCGGGGAGC AGCGGCTCTC ACGTGCGTCC CGACTTCGTG CTGCCGGAAC CGGAACTCGA CGGCCGGCTG GCCGAGGCCC TGGACGGGAC CGCGACGTAC GACTTCCGTC CGAACTCGGC ACCCGCGCCG ACCCCGCCGA CCAACCCAGA GAACACCGGC CAGTTCCGCA TCAGCGCCGG CAGCGACGAC ATGCGGCTGG ACTTCCGGGT CGGCGAACCC GGCCCGGCCA CGCCGCCCCC GCCGCCGCAG GCACCGCCCA CTCGGCCGCC CCTGAACTTC TCCTCCAGCT TCGACGACCT GCTCCCGAAC ATCCCGGACA TGGAGCACAC CGGAGAGTTC GCGGCCTACC GCGAAACACG GGACGAGCGC GACGACCTGC TCCTGCCGCC GCCGAACCCG TACGCCGCGC CCGGCCAGAA CCCGCAGGCG CCGTCCGCGG GCGGCTTCGG CAGCAACACC GAGCAGATGC CGGGCAGCGG TCTGAACAAC GACCTCGGCG CCGAACTGGC CGCCGGCGAC CCGTTCGCCG CGCCCGGCGA GGTCCGCATG ACGCCCTTCG GCGGACATGT GGACAGCGGC TTCGGCGACA GGGCTCAGAA CCCGCCGGCG CAGAACCCCG CGGCTCCGGC GCCGTACGGC GGCGGGCAGC AGCCCGGCGA CACCTCCAAC GGCCCGGCCT TCGAGGCTCC GCAGTTCGAG CCGCCGAGGT TCGAACCTCC GCAGTTCGAG GCTCCGCAGT TCCAGCCGCC GCAGTTCGAA GCCCCGCAGT TCGAGGCTCC CCAGTTCGAA GCGCCCCAGT TCGAGGCTCC GCAGTACGGC CAGAGCGCAC CGACTGGCGA CCCCATGGCG TCGGGCGGGT TCGGCGCTCC GTCCGGAACC GGCTACGGCA ACGACGCGCC CTCCTTCGGG CGCCGCCCGA TGGGCGAGCC GCTGTCCGGG CCCGGCTTCG ACGCACCGCA GTACGGCGAG CAGCAAAGCG CCCCGATCGG TGACGGACCC GGCGACCCGA TGGCGGGCCT GCGGAATCCG TTCACCGCGC CCGAGGCGCC GGCCGGCACC GGCTACGGCA ACGACGCCCC GTCCTTCGGG CGCCGCCCGA TGGGCGAGCC GCTGTCCGGA CCGGGCTTCG ACGCGCCGCA GTACGGCGAG CAGGCGCCCG CCGCCGACCT GTCCGGCTCC GGCTTCCAGA CCCCGGCCGC CGAACCGCGG TACGGCACGC AGCCGCCGGC CGGCGACCCC TCCGGCTCCG GCTTCCACAC CCCGCTCGGC GACACGATGG GCGGCGGGGG CTACCCGGCC CCGGCCGGCG AGCCGTTCGC CGCGCCGGAG CAGATGTCCG CCTCCGGCAA CCACTTCACC GACTACACCG ACCCGCTCAC CGCCCCGATC GAGTCCATCC CGATGGACCC GGCGGCGCAC ACCACCTCGA TCTTCAACGC GATCGAGTCC GAGTGGTTCC GGGTGCGGGC CGGCGAAGGC ACCGCCGCTC CGCAGAACGC TCTGGAGGCC GGCGCGGTGC GCCCGGCCGA ACCGGTCCGG CCGGCCGTGC CGGGACCGCG CTCAGAGCCC GCAGGAGACC CGCTGGCGGG CTCCGGCACC GGTTACGCGG CCCAGGGTCC GCAGACGCCC GCCGAGCCCG TCCAGCCCGT CCAGGCGGCC ACCACCGCGT CCACCCCGGC TCCGCCGACC GCCCCCGAGG CCGGTCCGGC TGCCCCGACC CCGCCGGCCG CGCCGGCCGC CGACCCGTTC GGCGCCCCGG CCCGGCCCGC CGCACCGCAC GAGGAACCCA AGGAGCCCAT GACCGACGAC CAGAGCTCCG CGGGCCAGAC CTGGCACTCG CCGGGCGACG ACGGCTGGAA GGCCGCCGAG GTGGTCAAGA AGCCGGTCGC GGCCGGCCTG ACCCCCAAGG GGCTGCCCAA GCGCGTCCCG CGGTCCAACC TCGTGCCCGG CTCGGCGGAC GGCACCGGCG CCGCGAAGGT GGCGCCCTCG CCGATCCCGG CGCGCTCGGC CGAGGCCGTG CGCTCCCGGC TGGCCAGCTT CCACAATGGG CTGCGCCAGG GCCGCGACGC CGCCGGGACC CCCGGCGAGG CGCAGCCCTC CGATCCCGCC AACCCCACCG CGTCCGACGG CCCGGCCGCC TTCGGTGCTC CTGAGCCAGG AAAGCAGGAC TGA
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Protein sequence | MGGPPPGGSI SDAAAGRTAP GELPRGVRDG VLPGQRPVPT PQESEGGGSH LPPPPPPTGQ ANRFAPRNWR VRTRLVVLVI VPLVATIFGA AARIVQQVGN VKTYDHATTM AAAASPLSTL IDALQDERDI SIEMMAFRVQ QNTDNSTLTN LTTSMATQRK ITDRATAEML PVLNKIDGSY PADTLSAIAN AKANMTGIEA LHTAVDGAFS YPVSVFDQYD KVLDSLDNLY EFVAADAGDQ QLINDARSLA DLGRMTETTS RERGFLTVLA VSSNPNQSQD NLAKLQGLIS DLASTRTEFK TIATTQMQQT LSDTVDVGES YTGANQYLQT IDDKLANGGA SDNGDQLVPG SVYTQYNSLL DRYKKVRAQQ AAALVKRADS LSNSARNTMY VNIGIIVGVL LVVSVATALI ARSLVRPLRV LQNTALEIAG NRLPEMVRRL RDADGSEPIE PIAPIALSST DEVGQVARAF DEVHREAVRL ATEQAMLRNN VNAMFTNLSR RSQSLVQRQL RLIDELENAE QDPDQLASLF KLDHLATRMR RNGENLLVLA GEEPGRRWSQ PVPLIDVLRA AASEVEQYER VTLRDLPTVE VAGRAVNDVV HLVAELLENA TSFSAPETKV SVTGNLLNTG GVMLEIEDSG IGMTPEELDD SNERLANPPV VDVAISRRMG LFVVGRLATR HGIQVRLRRS ATGGITALVL VPAALLAGNL SDAPAVGGNR AGTFGDIADT GQLPQLTSTG LPRRPGGAVR AEQRELPSPE EPQGPPNQAP ASLPPFGGER VPTASANDGD GWEDVSAAAP PYRGTDATPP GLADLLAETE AMSQGVTPMI REGDPGDPGS SGSHVRPDFV LPEPELDGRL AEALDGTATY DFRPNSAPAP TPPTNPENTG QFRISAGSDD MRLDFRVGEP GPATPPPPPQ APPTRPPLNF SSSFDDLLPN IPDMEHTGEF AAYRETRDER DDLLLPPPNP YAAPGQNPQA PSAGGFGSNT EQMPGSGLNN DLGAELAAGD PFAAPGEVRM TPFGGHVDSG FGDRAQNPPA QNPAAPAPYG GGQQPGDTSN GPAFEAPQFE PPRFEPPQFE APQFQPPQFE APQFEAPQFE APQFEAPQYG QSAPTGDPMA SGGFGAPSGT GYGNDAPSFG RRPMGEPLSG PGFDAPQYGE QQSAPIGDGP GDPMAGLRNP FTAPEAPAGT GYGNDAPSFG RRPMGEPLSG PGFDAPQYGE QAPAADLSGS GFQTPAAEPR YGTQPPAGDP SGSGFHTPLG DTMGGGGYPA PAGEPFAAPE QMSASGNHFT DYTDPLTAPI ESIPMDPAAH TTSIFNAIES EWFRVRAGEG TAAPQNALEA GAVRPAEPVR PAVPGPRSEP AGDPLAGSGT GYAAQGPQTP AEPVQPVQAA TTASTPAPPT APEAGPAAPT PPAAPAADPF GAPARPAAPH EEPKEPMTDD QSSAGQTWHS PGDDGWKAAE VVKKPVAAGL TPKGLPKRVP RSNLVPGSAD GTGAAKVAPS PIPARSAEAV RSRLASFHNG LRQGRDAAGT PGEAQPSDPA NPTASDGPAA FGAPEPGKQD
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