| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_7478 |
|---|
| Symbol | |
|---|
| ID | 8338848 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 8668784 |
|---|
| End bp | 8670691 |
|---|
| Gene Length | 1908 bp |
|---|
| Protein Length | 635 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644960557 |
|---|
| Product | Xylan 1,4-beta-xylosidase |
|---|
| Protein accession | YP_003118144 |
|---|
| Protein GI | 256396580 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.414529 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTTTTCC TGCCAAGACT CCGACGCGGA ACGCGGTTGG TGGCCGCGTT CCTGATAGCG
ATGGCGATCG CGGTGGCCGT GCCGGTGTTC GGCACGTCCA CGACGAAGGC CGCGGCGGCC
GTGTCGGCGC CGTGCGACAT CTACGCCTCG GGCAACACCC CCTGTGAAGC CGCCTACAGC
ACCACGCGCG CCATGTTCGG CTCGTACAAC GGGCCGCTGT ACCAAATCCA GCGTGCGTCG
GACAACAGCA CCCTGAACAT CGGTCTGCGC GCCGCCGGCG GCGTGGCCAA CTCGGCGCCG
CAGGTCTCGT TCTGCTCCGG CACGACGTGC ACCATCACGC TGCTCTACGA TCAGACCGCG
AACGCCAACA ACCTCCCGAT CTCGCCCGGC AAGGCCTGCG CCGGCTGCTC CGGCGGACTC
GGCGGTCCCG CCGCGAACGG CGCGGATATC GGCGCGAACG CGATGGCGCT GCCGGTGACC
GTCGGCGGCC AGGCGGCCTA CGGCGTGCTC GTGAACTCTG TCGGTACCGG ATACCGCAAC
AACGCGGCCA AGAACGTGCC CACGGGCTCG CAGCCCGAAG GCGAGTACAT GCTCACCTCG
TCGAACCTGA CCAGCGGCAG CTGCTGCTTC GACTTCGGCT CCGCCGAGAC CAACGACAGC
GACGACGGCA ACGCGACCAT GAACGCGATC TACTACGGCA CCGCCTGCTG GACCGGCGGC
TGCTCCGGCA CCGGTCCCTG GGTCGGCGGC GACCTCGAGA ACGGCATGTA CTTCAGCGCC
GCGGGTCCGA ACCCGGCGAG CATCCCCAGC GAGACCGGCT CGTTCGTGAC CGCCTGGGAG
AAGAACAACG GCACGACCAA CTTCACGCTG AAATACGGCA ACGGCCAATC CGGGGGACTG
ACCCAGGCCT ACTCCGGCGC GCTGCCCAAC GGCTACAACC CGATGAAGGT GCAGCCCTCC
ATCGAGCTGG GCACCGGCGG CGATAACAGC GACCTGGGCA AGGGCGAGTT CTTCGAGGGC
GCGGTCACCA CCGGATTCCC CTCGGACGCG ACCGAGAACG CGGTCCAGGC CAACGTGAAC
GCGGCCGGCT ACGCCAACAA CACGACCACG TTCAGCACCA CCGCGTCGGT GATCAGCCTC
AAGGCGCACG CCAACGGCCG CTACGTCGAC GCGCCGAACA CCACCACGTC CCTGATCGCG
GACGCCACCT CGATCGGCAA GGCCGAGCAG TTCGAGATGG TCACCGGCAC CGACGGCACG
GTGAACCTGA AGTCCTTGGG CGACAACAAC TGGGTCACCG CCGACAACGA CGGCGCCGCA
CCGCTGATCG CCAACCGGGG CGGCGTCGGC AACTGGGAAG TGTTCGGGCT GATCCACAAC
GCCGACGGCA GTGTCAGCCT TCGTTCCTAC ACCAACCAGG ACATCGTGAC CGCAGACAAC
GCCGGCGCCT CGCCGTTGAT CGCGAACCGC ACGTCCGTCG GTCCCTGGGA GGAGTTCGAC
CTCGTCCAGG ACACCGTGCC GGTCAGCCTG CGGGCGCACG CGAACAACGA CATCGTGACG
GCGGACAACG CCGGTGCGGC GCCGCTGATC GCCAACCGCA CCGCGGTCGG TCCGTGGGAG
ACCTTCGACC TGATCCCCGA CGCGGACGGC GGCGTGAGCC TGCGCTCGCA CGCCAACAGC
GACATCGTGA CGGCGGACAA CACCGGCGCC TCGCCGCTGA TCGCCAACCG CACCACGATC
GGTCCGTGGG AGGAGTTCAC CCTCGTCGCC AACGGCATCG GCAGCGTGAG CCTGCGCTCC
CATGCGAACA ACGACATCGT GACCGCGCCC AATGGCGGCG CTTCACCGTT GATCGCCAGC
AAGACATCGA TCAGTCAGTC GGAGCAGTTT GACCTCGTCT TCGACTGA
|
|---|
| Protein sequence | MLFLPRLRRG TRLVAAFLIA MAIAVAVPVF GTSTTKAAAA VSAPCDIYAS GNTPCEAAYS
TTRAMFGSYN GPLYQIQRAS DNSTLNIGLR AAGGVANSAP QVSFCSGTTC TITLLYDQTA
NANNLPISPG KACAGCSGGL GGPAANGADI GANAMALPVT VGGQAAYGVL VNSVGTGYRN
NAAKNVPTGS QPEGEYMLTS SNLTSGSCCF DFGSAETNDS DDGNATMNAI YYGTACWTGG
CSGTGPWVGG DLENGMYFSA AGPNPASIPS ETGSFVTAWE KNNGTTNFTL KYGNGQSGGL
TQAYSGALPN GYNPMKVQPS IELGTGGDNS DLGKGEFFEG AVTTGFPSDA TENAVQANVN
AAGYANNTTT FSTTASVISL KAHANGRYVD APNTTTSLIA DATSIGKAEQ FEMVTGTDGT
VNLKSLGDNN WVTADNDGAA PLIANRGGVG NWEVFGLIHN ADGSVSLRSY TNQDIVTADN
AGASPLIANR TSVGPWEEFD LVQDTVPVSL RAHANNDIVT ADNAGAAPLI ANRTAVGPWE
TFDLIPDADG GVSLRSHANS DIVTADNTGA SPLIANRTTI GPWEEFTLVA NGIGSVSLRS
HANNDIVTAP NGGASPLIAS KTSISQSEQF DLVFD
|
|---|
| |