| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_7006 |
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| Symbol | |
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| ID | 8338372 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 8144041 |
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| End bp | 8145267 |
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| Gene Length | 1227 bp |
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| Protein Length | 408 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644960086 |
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| Product | pyridoxal-dependent decarboxylase, exosortase system type 1 associated |
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| Protein accession | YP_003117677 |
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| Protein GI | 256396113 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase
[TIGR03099] pyridoxal-dependent decarboxylase, exosortase system type 1 associated |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0015439 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACCCTGA CCCAAGCCCT CGCCGCGCGC TTCGGCCGGG CCGGCGGCGC GCTCGCCGTC
GGCGGCGTCC CGGTGGAGCG CCTGGCCGCC CGCGTCGGCG CCACGCCGTT CTTCGCCTAC
GACCGCGGCC TCCTGGCCGA CCGGCTCGCC GCCGTCCGGC ACGCGCTGCC GGCCGGCGTC
CACCTGAGCT ATGCCGTGAA GGCCAACCCG ATGCCGGCGC TGCTGCACCA CCTGAGCGCT
CTGGTCGACG GCTTCGACGT CGCCTCGGGT CTGGAGCTGC GCGCCGCGCT GGACACCCCG
GTGCGCCCGG AGAAGGTGAG CTTCGCCGGG CCCGGCAAGA CCGTCGCCGA GATCCGCCAA
GCGGTGGCCT CCGGGGTCAC CGTCGAGCTG GAATCAGAGC TCGAACTCAC CCGGGTCCGG
GCGGCTGCCG CCGAGATCGG TGTCGCGGCG CGCGTCGCGG TCCGGGTGAA CCCCGATTTC
GCCGTGCGCG GCTCGGGGAT GCGGCTCGGC GGAGGTCCGC AGCAGTTCGG CGTGGACTCC
GAACGCGTGC CGGATCTGCT GCGCCTGATG GCGGGGGAGG ACCTGGAGTT CCAGGGCTTC
CACATCTTCG CCGGCTCGCA GAATCTGCGC GCCGAGGAGA TCTGCGAGGC ACAGCGCCGC
ACCGTCGATC TGGTCGTCGC ACTCGCCGAG CACGCGCCCT CGCCGGTGCG TTACGTCAAC
GTCGGCGGCG GCTTCGGCAT CCCCTACACC GCTCGGGACA CCGCGCTGGA CCTGGCGCCG
ATCGGGGAGA ACCTGGCGAA GCTGACCGAC GTGGTCGCCG CCGCGCTGCC CGGCGCGCGG
ATCGCGGTCG AGTTGGGCCG GTATCTGGTC GGCGAGGCCG GTGTGTACGT CACGCGGGTG
CTGGACCGCA AGGAGTCACG CGGCAAAGTG TTCCTGGTCG TCGACGGCGG ACTGCACCAC
CAGCTCGCGG CGTCGGGCAA CTTCGGACAG ACGATCCGCC GCAACTACCC GCTCGCGGTG
GCGAATCGGA TCGACGAGAC CGCCGCGGGC AAGGTGTCAG TGGTCGGATG CCTCTGCACG
CCGCTGGACC TGCTCGGCGA CGACGTCGAC CTCCCGGCGG CGGACGTCGG GGACCTGATC
GTGCTGTTCC AAGCCGGCGC CTACGGTCTG ACGGCCAGTC CGACCGCCTT CCTCAGCCAT
CCCGCGCCGG TGGAAGTACT GGTCTAG
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| Protein sequence | MTLTQALAAR FGRAGGALAV GGVPVERLAA RVGATPFFAY DRGLLADRLA AVRHALPAGV
HLSYAVKANP MPALLHHLSA LVDGFDVASG LELRAALDTP VRPEKVSFAG PGKTVAEIRQ
AVASGVTVEL ESELELTRVR AAAAEIGVAA RVAVRVNPDF AVRGSGMRLG GGPQQFGVDS
ERVPDLLRLM AGEDLEFQGF HIFAGSQNLR AEEICEAQRR TVDLVVALAE HAPSPVRYVN
VGGGFGIPYT ARDTALDLAP IGENLAKLTD VVAAALPGAR IAVELGRYLV GEAGVYVTRV
LDRKESRGKV FLVVDGGLHH QLAASGNFGQ TIRRNYPLAV ANRIDETAAG KVSVVGCLCT
PLDLLGDDVD LPAADVGDLI VLFQAGAYGL TASPTAFLSH PAPVEVLV
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