| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6958 |
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| Symbol | |
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| ID | 8338324 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 8039050 |
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| End bp | 8043537 |
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| Gene Length | 4488 bp |
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| Protein Length | 1495 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644960039 |
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| Product | YD repeat protein |
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| Protein accession | YP_003117630 |
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| Protein GI | 256396066 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0165328 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.66981 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCGTC CAACCGGGTG GGACATCCTG GGCCTGGACG GGGATCCGAC ACCCGGTGTG
GTTGAGTCGG TACAGACTCT GGCCAAGGAG CTCGGCGACT TCGCTCACGA CGTGGAGTCG
GCGTATCGGA GCCTGAACTC GTTCGGGTCG GACGCTTCGG CTTTGGAGTG GGTTGGGCAG
ACCGCTGATG CGTTCAAGGG CCAGTTCGGT CCGCTGCCGG GTCGGCTACA GAAGCTGTAC
ACGTCCTACA GCGAGGCATC CGACGCGCTG TCGGCGTACG CTCCGGTGCT GCAAGCTGCG
CAGTCGAAGG CTGATGCGGC CCTCCGTCAA GCGCAGGACG CGCACGCCGA TCTGCAGCGT
GCCACCACCA GCGCCAGTAG CGCCGCGACG GATCTGAAGA CGGCGCAGCA GAACCAGGCT
GCCAACCCGA ATCAGCAGGC GGTCACCGAC GCACAGACCG CGCATGACAC GGCGCAGACC
AACCTGACTA ATGCCAAGGC GCGCATGGCC GATCTGGCCA AACAGGCCAA CGACGCCTAC
AACGACCGCA TCACAGCGGC GAAAACCTGC GCCAGCGCTC TCCACCACGC GCAGTCTGAT
GGCATCCACA ACAAGCATTG GTGGGAGCAC GTCGGGGAAT TTTTGTCCGA GTGGGGCGGG
AAGATCGCCG AGATCGCCAA CGACCTCGCT CCGTTCCTGG ACGTCCTGGC CCTGGCGACC
TCCTGGATCC CCGGTGTCGA TGTCATCACA GCCGGCCTGG CCGAAGCCGA CAACCTGATC
GCGCTGGCCG GCACAGGGCT CGAAGTCGCC GGCGACGCGA TGCAGGGCCA TTGGGGCGAC
GCCCTGATGG GTGCGGGGAT GCTCGGGGTC ACCTTCCTCG GTGGCAAGGC CTTGGAGAAG
TTCGGCGGCA AGCTCCTGGG CAAATTCGGC AAGGAAGCAC ACGAGGCGGA AGGCAGCGAA
GCCTCCTTCT GCAAAATCGA CCCGATCGAC GTCGTCTCGG GCCAGATGCT CACCGCCGAA
TCGGATCTGT CCCTGCCCGG CGTCTTGCCG GTGATCCTGC GGCGCGCCTA CGCCTCGGCA
TATGCCACTG GTCGCCTGTT CGGACCAGGT TGGTCCTCTA CCCTCGACCA GCGAATCGCC
CTGAACGCCG CAGGTATCCA CTTCGCAGGC GACGACTCCC AGATTCTCCA TTACACGCTC
CCCGACGGGG ATTCCCCCGT CCTTCCTGAG CGGGGAGCGC GGTGGCCGCT TGTCTGGGAT
CGTCAGACCG GTGAGATTCG GGTTACTGAC CCGTGGAGCG GCCTCACTCG CCATTTCGCC
GTCGTTCACC ACAACGAGAA CGCTGCGCAG ATCAGGGACC TGACCGCGAT ATCTGACCGG
AACGGCAACC GGATTAGCTT CGTGCGAGAC GAACGCGGGA CGCCGGTCGC TATCGAGCAC
CCTGGTTACC GCGTCGCCGT GGAAGCGTCC AATACGGCCG CCGGCGTCCG CGTCACGGGC
CTGCGCCTGC TCGACGGATC TCCGGATGGC GTCACCGTCA AACGATTCCA CTACGACGAT
CGCGGTCGCT TGGTAGGTGT CCTCGACTCC TCTAACCTGC CGTACAACTA CGAGTACGAC
GATGCGGACC GGATCGTCGC CTGGGTCGAC CGGGTCGGCT ATCGCTACGC CTACGAGTAC
GACGAGGGTT CGCGGGTCGT ACGCACTCAA GGTGACGGCG GTTACCTGTC CGGGTCCTTC
GTTTACGATG ACGAGCACCA GACCACCGTC TTCACGAACT CTCTCGGCGA CTCGATCACG
TACGTCTATG ACGAGCTGGG CCACCTGATC TCTGTTACCG ATCCGCTTGG CAACCAGACT
CGCGCCGAGT TCGACCGGTA CGGTCGGCCG CTGTCTCGCA CTGATGCCTT GGGCCGTCGG
ACGGTCTACG AACTCGGCGA ACACGGTGAT GTGGTCCGCC AGATCGGTCC AGACGGCGCG
GTCACCGAGT TGGACTACGA CGAGCACCAT CACATCGTCG CCGCACGTGC GCCAGACGGA
GTGCTCCGGC AGCAGCGTTA TGACCAGCGT GGGAACCTGA TCGTTGCCGT TGATCCGCTG
GGCATCGAGA ACCGTTTCGC CTACGGCGAC GACGGAGCCT TGCACGAACT CACCGATGCC
CTCGGCGCCA CAACTCGTGT CGAAACCGAC GGCGCTGGCC TGCCAGTTGC CACGATCGGC
CCGCTAGGCG AGGTCACTCA GGTAGTCCGC GACACCTTCG GCCGCATCAC GACGATCGTT
GATCCCGTTG GCGGTCGCGC TGAATACGGC TGGACCGTCG AAGGATATCC TGCCTGGTAT
GCCGCGCCTG ACGGGGCACG TTGGGAATGG TCCTATGACG CGGAGGGGCG CCAGGTCGGG
GTGCTCGACC CTCTGGGCAG TCGGACAGTG TTCGAGCTCG GGCCATTCGG CTCGATGGTT
GCGCGCGTGG ATCCGACCGG TGAGCGTCAC GAGTTCGCGC TCGATAGCGA GTTGCGTCAG
ACGTCGGTGA CGAACAGTGC CGGCGCGACG TGGCGGTACG TGCACGACGC GGCCGGTCAA
CTGGTGTCCG AGACGGACTT CATCGGCCGC ACTCTCGCCT ATGAGCATGA CGCGGCTGGG
CAGCTGACGG CTCGCATCGA CGGACTCGGG AACCGTTCGG AGTTCACCAG AGATGCCGCG
GGTCGGGTCG TTGTCCGCCG GACGAGCGAT GGAGAATTCG CTTACGAGCG CGACGCGATG
GGCCGCCTGA CCCGCACGAC TGGACCTTCC GGCGCCGCTG TCATCTTCGT TTATGACGCT
GCGGGTCGGG TGGTGTCCGA AACGGTGGAT GGCCACGAGG TCGTCTCTGA GTACGACTCT
GCGGGGCGTC GAATCCGTCG CACCAGCTCT TCGGGAGCGG TCTCGGCGTG GACGTTCGAT
GCTGCGGGCC GCCCAGCCGC GTTGGCGGCG GGCGCAGGGA AGCTCGACTT CCAGTACGAC
GCGGCAAGCC GTCTCACGGG CGTCGTGTTC GGTCCGCAGG CCCGGCTCGA GCAGGGCGTG
GATGCAGTCG GACGGCTGGT TGCGCAGCGG CTGTGGAGTG AGGAACGGCC TATCGTGGGC
GGGCAGCCGG CGCTGGGTCG CGATATTGGA TATCGGCCAG ACGGTACACC CGCAGTCGTG
ACCGACAGCT TGCGAGGCGT CCGTCGTTAT GACTTGGACC CGGCTGGCCG GGTGACGGGA
GTCAGAGCGG AAGGCTGGTC GGAGTCGTAC GCGTACGACG CCTTCGGCAA CGTCGCCCAG
GCCGACGTGC CGACTGACAC GGACACTTCC GGGGCTCGGA CCACCGACCG AACGCTGATT
CGGCAAGCTG GGCGCACGTC TTATGAGTAC GACGTCGCGG GCCGCCTGGT ACGCGCCCTC
CGGCGCACAC TCGACGGTCG GCGCAAGGAA TGGACGTATT CCTGGAACGC TGATGACCAG
TTGGTCCAGG TGGGTCTGCC GGACGGCACG GCGTGGCGCT ACCGCTATGA CCCGCTGGGT
CGTCGGACGG CTAAGGAGCA TGTAGCGGCC GGTGTGGTCG TGGAGACCGT TCGTTTTGCG
TGGGACGGCA GCCAGCTGGT CGAACAGTAC TCTTCCGGCG GCGATGGTGG TCGGGAGGTG
TGGACGTGGG ACTACGATCC CGATACTTTC CGGCCGACCG CGCAGCGCCG TCGTCACTGG
GTTGACGACG CTTCTCAGGA GGTTGTCGAC GAGATCTTCC ACGCGATCGT CACGGACCAA
CTCGGCACGC CGTCCGAACT GGTCGATCAG GGTGGCCGAA TCGTCTGGCA CACCACGACG
AGTCTGTGGG GTACACAGAC CGCCGTATCA GCCGATGACG GAGTCGATTG CCCCCTGCGC
TTCCCTGGCC AGTACTACGA CGCCGAGACC GGTCTCCATT ACAACCGTTT CCGCTATTAC
GACCCTGAGA CCGCTGCTTA CCTCACACCG GACCCGCTCG GTCTGGCTCC GGCGGCCAAC
GACCGGGCGT ACGTTCCGAA CCCGCTGACG TGGGCCGACC CGTATGGTCT GGCCTGCACC
GGGACCACCG AGCCCGGAAG CACCGATCTG AGCCAAGCGG TCATCCAGGA GCGATTGCGA
CTGGGCAAGA AGGGCAACAA CTTCGCCGCC GCACGCTACA TCGATGACAA CGGAGTGGAG
CAAATAGCGG TCGCTGCCTC GTCAAAGGGC CAGTTCATGC ATGCCGAGCG TAAGCTGGTG
CGCCAGTATG GTGACAAGAT CACCGAGGTG TATTCCGAGT TTGAGCCCTG CATCGGAACG
AACCAGTGCC GAAAGACTCT GGGCGATATG GGTATCAAGT ACACCTACTC GTGGGCGTGG
ACGCTCTCGA AGGACGGCGT AGCAGCCAAC GCTGCACGTA AGGCATACGT GGACCAGATC
TTCGATGACG CTGAGGCAGG AAACTGGGCG GCGCCATGGG CAGACTAG
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| Protein sequence | MARPTGWDIL GLDGDPTPGV VESVQTLAKE LGDFAHDVES AYRSLNSFGS DASALEWVGQ
TADAFKGQFG PLPGRLQKLY TSYSEASDAL SAYAPVLQAA QSKADAALRQ AQDAHADLQR
ATTSASSAAT DLKTAQQNQA ANPNQQAVTD AQTAHDTAQT NLTNAKARMA DLAKQANDAY
NDRITAAKTC ASALHHAQSD GIHNKHWWEH VGEFLSEWGG KIAEIANDLA PFLDVLALAT
SWIPGVDVIT AGLAEADNLI ALAGTGLEVA GDAMQGHWGD ALMGAGMLGV TFLGGKALEK
FGGKLLGKFG KEAHEAEGSE ASFCKIDPID VVSGQMLTAE SDLSLPGVLP VILRRAYASA
YATGRLFGPG WSSTLDQRIA LNAAGIHFAG DDSQILHYTL PDGDSPVLPE RGARWPLVWD
RQTGEIRVTD PWSGLTRHFA VVHHNENAAQ IRDLTAISDR NGNRISFVRD ERGTPVAIEH
PGYRVAVEAS NTAAGVRVTG LRLLDGSPDG VTVKRFHYDD RGRLVGVLDS SNLPYNYEYD
DADRIVAWVD RVGYRYAYEY DEGSRVVRTQ GDGGYLSGSF VYDDEHQTTV FTNSLGDSIT
YVYDELGHLI SVTDPLGNQT RAEFDRYGRP LSRTDALGRR TVYELGEHGD VVRQIGPDGA
VTELDYDEHH HIVAARAPDG VLRQQRYDQR GNLIVAVDPL GIENRFAYGD DGALHELTDA
LGATTRVETD GAGLPVATIG PLGEVTQVVR DTFGRITTIV DPVGGRAEYG WTVEGYPAWY
AAPDGARWEW SYDAEGRQVG VLDPLGSRTV FELGPFGSMV ARVDPTGERH EFALDSELRQ
TSVTNSAGAT WRYVHDAAGQ LVSETDFIGR TLAYEHDAAG QLTARIDGLG NRSEFTRDAA
GRVVVRRTSD GEFAYERDAM GRLTRTTGPS GAAVIFVYDA AGRVVSETVD GHEVVSEYDS
AGRRIRRTSS SGAVSAWTFD AAGRPAALAA GAGKLDFQYD AASRLTGVVF GPQARLEQGV
DAVGRLVAQR LWSEERPIVG GQPALGRDIG YRPDGTPAVV TDSLRGVRRY DLDPAGRVTG
VRAEGWSESY AYDAFGNVAQ ADVPTDTDTS GARTTDRTLI RQAGRTSYEY DVAGRLVRAL
RRTLDGRRKE WTYSWNADDQ LVQVGLPDGT AWRYRYDPLG RRTAKEHVAA GVVVETVRFA
WDGSQLVEQY SSGGDGGREV WTWDYDPDTF RPTAQRRRHW VDDASQEVVD EIFHAIVTDQ
LGTPSELVDQ GGRIVWHTTT SLWGTQTAVS ADDGVDCPLR FPGQYYDAET GLHYNRFRYY
DPETAAYLTP DPLGLAPAAN DRAYVPNPLT WADPYGLACT GTTEPGSTDL SQAVIQERLR
LGKKGNNFAA ARYIDDNGVE QIAVAASSKG QFMHAERKLV RQYGDKITEV YSEFEPCIGT
NQCRKTLGDM GIKYTYSWAW TLSKDGVAAN AARKAYVDQI FDDAEAGNWA APWAD
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