Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_6407 |
Symbol | |
ID | 8337770 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 7378952 |
End bp | 7385536 |
Gene Length | 6585 bp |
Protein Length | 2194 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644959508 |
Product | YD repeat protein |
Protein accession | YP_003117102 |
Protein GI | 256395538 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3209] Rhs family protein |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.524494 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCCGGGA CGAAACGCGC CGGGCGGGCT CAAAAGCGGG TCCGGCACCG GATCCGGGCG GCCGGGCTGA CCGCCGCCGT GCTGGTCGCA CAGCTGGCGC TGGGCGGTGG GGGAGCGGTG GCACAGGCCG CTGCTTCCGG CGGGCACGGC GGCGTCAACG TCGCGGCGCC GACCCGGGAC AAGCCGGCGT CGGTGCAGCT GGTGACCCCG CACGCGGTCG CGCCGAAGGC GATGGCGAAG GCTCCCGCGC CGGCGACGGC GTGGCCGGCC GCCGGGAGCG CCGAGGCCCG CCTCGCCGCG CCGGCGTTCG GGAATCAGAA CGCGAATACG CACTTCGCCG TCGCCGAGGC GCCGATGGCA CAGGCCGGCG CGCTTCCGGT GTGGGTGGGG TCGGCGGCAC CGGGCGGCGC GGCTCCCGAC GCGCAGGTGC GGCTGTACTC CCGGGACGCG GCGACGGCGG CCGGCGTGCC CGGATTGCTG TTGTCGGTGG CCCGATCCGA CGGCGCGGCC GCGGCGAAAA CGACGGCAGC CGCGACGACG GCGACTGTGC CGGCACGCGT CGCGGTCGAC TACACCGGCT TCGCCGACGC CTACGGCGGC GGCTGGTCGA ACCGCTTGAA ACTGGTCGCC ATGCCGGACT GCGCGCTGAC CACGCCGCAG CTTCCCGCCT GTCGCACCAC GACCCCGCTG GCGTCGGTCG ACGACACCGC GGCCCACCGG GTGACGGCCT CGGTGCCGTT GGCGGCGGGC GCGCAGGTGC TGGCGCTCAC GTCGACGTCC TCGGACTCGG GCGGTACCTA CACCGCGACC TCGCTCCAGA CGACCGGCAG CTGGACGGCC GGCGGCTCCA GCGGCGCGTT CGACTACTCC TACCCGATGG CGGTGCCGAA CGTGCCCGGC GGGCTGAGCC CCGCCGTGTC GCTGTCCTAC GATTCGCAGA GCGTTGACGG CCGCACCTCC GCCACCAACA GCCAGGCGTC CTGGGCCGGC GACGGCTGGG ACTACTCGCC GGGCTTCATC GAGCGCTCCT TCGCCAGCTG CGCGGACAAC CCCGCCGGCG CGACCAAGAC CGGCGACACG TGCTGGTCGG CGAACGACAC CTACACGATG TCGCTGGGCG GCCGGTCCAC GCAGCTGGTG GACGACCCGG TGAAGGGCTG GCACGGCCAG GACGACGCGG GCGACCGCGT CCAGCTGCTG ACCGGCGCCG TCAACGGCGA CCACGCGGGC CAGTACTGGG TGGTCACCGA GCCGAGCGGC ACCCAGTACT ACTTCGGGCA GAACCGGCTC AAGGGCTGGG CCGGAAGCGA CGCGACCACC GCCTCGACGT TCACCGAGCC GGTCTACTTC CCCTCGACGC CGCCGGATTC GGACCCGGAC GCCGCGTGCT ACAACGCCAC GTTCTCCAGC TCCTGGTGCA CGCTGGCCTA CCGCTGGAGC CTGGACTACG TCGTCGACAC GCACAAGGAC GCGATCGCGT ACTTCTACAA CCAGGAGACG AACCACTACT CGCCGGACAA CGGATCCAAG GCGACGGCCG GGTCGCTGTA CACCCGCGCC GGGACGCTGA CGAAGGCGCT CTACGGCTTC CGCGACGGCC AGGTGTACTC CGCCTCCCCG CAGCCGGCCG CCGAAGTGCT GTTCGGCGAG AACGGGCGCT GCGACACCGC CGCGACCGGC TGCGCCACCT CCACGCTGAG CTCGACGACC GCCGGGAACT GGCCGGACGT CCCGTTCGAC CAGCAGTGTG CGTCCGACAC GGCGTGCTCG ACCATCAGCC CGACGTTCTG GACCGAGAAC GAACTGACCT CGGTGCAGAC GAAGATCCTG GTCGGGACCG GGTACCAGAA CGTCGACCTG TGGCAGCCCG AGTACGCGTT CCCGGCGACC GGCGACAGCA CGCCGCGCGC GCTGTGGCTG TCCTCGATCA CCCACACCGG GCAGGACACG CTCGGCGGGC TTCCCGGCGG AGCCACGCCG ACCGCGCCGC CGCTGCCGCC CACCGTCTTC ACCGGGCTGC GGCTGGCGAA CCGGGTCCAT GTCACCGACG GATACGAGCC GATCACCCGG TACCGGATGA CCGGGGTCAC CAGCGAATCC GGCGCGGTGG TCAGCGTCGA CTATCAGGGT GCTTCCTGTA CCGGCGGCAC TCCGGCCGTC GATGCCAACA CGACGCTTTG CTATCCGCAG TACTGGACAC CGCCATTGGC GTCCACGCCG ATCCTGGACT GGTTCAACAA ATACGTCGTG CACGACGTGT CCACCACGGA CCCGGCCGGC GGCGCGCAGC CGCTCTACGT GCAGTACGCC TACGGCAACG GAGCCTGGCA CTTCGACGAC AACCCGCTGA CCCAGGCGAA GTACCGGACC TGGGACATGT GGCGCGGGAC GGCCACGGTG ACCGCCGACA CCGGGCAGGC CTCCGACTCC AGCCCGATCT CCGAGACGGT GGCCGGCTAT ATGCAGGGCA TGGATCAGGA CCCGAACTCC TCCGGAGGCA AGACCTCGGC GAGTGTGAAG GACTCGCGCG GCGAGGTCGT CACGGACTCT GATTGGCTTG TCGGGCAACA GCGGGAGAAG ATCGTCCGCA ACGGCGTCAA CGGGCCCGCG ATCTCCGACG ACATCACCGA CATGTGGGCG CAGCGGACCG CCTCGCAGTC CCGGCCCGGC ACGGGTCTGG ACGCGGTGGT CGCCTACCAG GTGGCCATGG CCGCCACCCG CGGCTACGCC CCGACCTCGA CCGGGGGCAC GCGCGCCACC GAGTCCGACT ACACCTACGA CGGCTACGGC CGGGTCACCG CCGTCAGCAG CCTCGGGGAC ACCTCCACCG GCGCCGACGA CAGCTGCACC CGGACCGCCT ACGCGCAGGA CACCAGCCGG TGGCTGCTGG ACCTGCCCTC GCGGGTGTCC ACGCTGAACG TGGCGTGCAC GGCCACGCCG TCGTATCCGG CGAACCTGGT CACCGACACG CAGAACCTGT ACGACCTGTC CGCCACGGTC GGCACGGCGA ACGGGTCCGG CGACATCACG ACCAGTCAGA AGGCTGACAC GGTCGCCGCC TCCGGCGTGC CGCACTACGC GACCCAGGCC ACGACGACCG TCGACGAGTA CGGCCGTCCC ACCTCCTCCA CCGACGGGCT CGGCCGCGTC ACCACCACCT CCTACACGCC GGCCACCGGC GCGGCGCCGA CCTCGGTCAC CACGACCGCG CCGACCCCGG CCGGGCAGAC CTCGGCGTTC ACCACGACCA AGACCTACGA CCCGGCGCGC GGCCTGCAAC TGACCGCCAC CGACGCGGCC GGGCACAAGG GGTATCAAAC CTATGATCCG CTGGGCAGGC TCACGGCGTC CTGGGCGGCG CAGACCAACG CGACGCCGAC CACGACCCTG CCGAACGCCA AGTTCACGTA TCAGGTCTCG AACGGCACGA CCCCTTCGGT GGTCACGACG TCCCTGCTCA ACGACGCGGG CACCGGATAC CAGGCTTCTG AGACGCTCTA CGACTCGCTG ATGCGCCAGC GCGAGACCCA GTCCCCGACG CCGGACGGGA ACCGCGTCGT CGCCGACACC ACCTACGACT CGCACGGCCG CAAACTGCTG ACGACCGACG GGTACTACGC CACCGGCGCC GTCGGCCCGG CGCTCGTGAA AGCGGCCCAG GGCACGATCC TGACCCAGAA CGGGTTCGCG TACGACGGTG CGGACCGCCA GCTCAAGGAC ATCACCTACT ACGCGGCGAG CGAGAAGTGG GAGAACGACA CCACGTACAA CGGAGTCGAC GAGACCACCA GCACCCCGCC GGGCGGCGCC GGCGGGGACA CCGCCGCCTC CACCTACACC GACGCGCTCG GCCACACCGT GAAGGTGGTC CAGTACAACG GTTCCAGCTC GACCGACCCG GTCGCCACCA CGACCAGCTA CGGCTACACC CGGGACGGCA AGACGGCGTC GGTCGCCGAC ACCTCCGGGG ACACCTGGAC CTACGGCTAC AACCTGCTCG GCGAGCAGGT CAGCCAGAGC GACCCGGACA CCGCCGGCTC CACGTTCACC TACGACGCCG CCGGGCAGCA GATCACCGCG ACCGACGCCC GAGGCAAGCA GGTCACCACG GCGTACGACG CGCTCGGGCG CAAGACCGCC ACGTACGACA CGACCGGAGG CGCCACGCCT GCGGCCGGCA ACAAGACCGC GTCCTGGACG TACGACACCC TCGCCAAGGG CTACCCGACG TCTTCGACCA CGTATGACAA CGGCTCCGCG TACATCTCCA CCGTGCTCGG ATACACCACC TTGGGGCAGT CCAAGGGGAC GGCCGTGGTC ATTCCGGCGG CTGAAGGGAA GCTCGCGGGC ACCTACGTGC AGCAGTTCAC TTATACGGCC GCGGGCCGCA ACGCCACCAC GACGGACAGC GCGGACGGCG GGCTGCCGGC GGAAACCATC AGCACGCAGT ACGACGCGCT CGGCCAGCCC TACAGCCTGA CCGGCACCAA CACCACCTAC GTGGCGGACC TGACGACCGA CCAGTTCGGC AAGCCGTCCA TCTTCACCTT CGGCGCGAGT TCCAACAGCG CCTACCTCGA CCTCACCTAC GACCCGATGA CCGGCCGGCT GGCGACCGCC GCCACGGTGG CGACGATCAA CAGCTCCAGC CGTACCGTCG ACGACACCAC GTACGGCTAC AACCAGGCGA CGGGCAATGT CACGTCGGTG TCGGACCTGC AGAACGAGAC CGGGGTCCAG GTGACCGACA CCCAGTGCTT CGGCTACGAC GGGCTGCAGC GCCTCACCGC GGCGTGGACC GCGACCGACA GGTGCGCCGC CACTCCGAAG GCGGGCAGCT CCGCCACGGT CGGCGGGCCG AACCCGTACT GGCAGACGTT CGGCTACGAC GCGCTGGGCG ACCGTGTCTC AGAGGTCGAC CACAACACCG CCGGTGTCAC CGCCGAGGAC GTCAGCACCG GCTACGCCTA CCCGGCCGCC GGCGCCGGCG CGACCCGGCC CAACGCGCTG AGCAGCACCA CGACCACCGG ACCGACCGGT TCGGTGAGCG CGCAGTTCGG CTACGACCAG GCCGGCGACA CCGTCTCCAT CACCGACCCG GTCCACGGCG ACCACACGCT GGCCTGGTCC GACTCCGGCA AGCTCCAGTC CGACACCACC GCCGGCGGGA CCAGCGGCTA TGTCTACGAC GCGGACGGCA ACCTGCTGAT CCGCCACGAC CCGGGCACCG GCACGCTGTT CCTGGGGGAC GAGCAGATCA CCGGCACGTC CACCGCGGTG AGCCAGGCGG TGCGCTACTA CAGCATCGGC GGGCAGACGG TGGCGGCTCG TACGGCGACC GCGGGCGGCG CGACCCAGGA CGTCCAGTAC CTGATGCCGG ATCGGCAGGG TACTGATGTT CTGGCCCTAG ACTCGGTCAC CCAGGCCGTC ACCCGCCGCG AGTTCACGCC GTACGGCGGC GGGCGCGGTC CGGCTCCGGC CGCGTGGCCC GGCGGCGACC GCGGCTACGT CGGCGGCGCG CCGGACCCGA CCACCGGCAT CGAGACGCTC GGCGCCCGGC AGTACGACCC GGTCACCGGC CGCTTCCTGT CCACCGACCC CATCCTGGAG GCCAACGATC CCAGCCAGAT GGGCGGCTAC AGCTACGCCG CCGACAACCC GGTCACCGAC TCGGACCCCA CCGGCAAGCG GGTCGAGGAC CCCGGCACCG GCTGCAACGG CGACGCCGCG ACGGTGCAAC AGTGCATCGC CGGCATGCCC CGCATGCAGA AGTCCTCGAC CGACACCCAC ACTCCCGGAA CGACCACCAC CGACCACGGA GGCAGCACCA ACGGCGGGAG CGACGGCGCG TCAGACCCGG GCTCCTGCTC CAACCAGTCC TGCTACCTCG ACTACGTCAA CCCCTCCTAT GCCGCAGCCG AGTCCGCCGC CCGCGCCGCG ATGCTCAGCG CCGAAGCGGC CGCCGACCTC GCCCGCGAAC AAGCGGCCGC CGCGGCTGCC GCCGCCGCCG CGAAGGCCAA GCACCACTGC GGGCTGAACC CGTTCTCGTG GGGCACGTGC CTCAGCGATG TCGCTGGGGC GAGTGCGGGG GCGGTCTCGA CGGCTTCCCG GGACGTGTTG AACCCGGACT GTCCGAGCGG CGCCGGCCAC ATCACGTGCG AGAACCAGAA TTGGGACTTC GAAGGGAGCG GGGCCTGGTT CAAAAAAGAG TTCCTCTCCC GGGATGGGTG GGAAGGACAC GGCGAGTGGT TCGAGGGCGT CAGCGCCAAG TTCGGGTTCA CCTCTGTCGT GGCCTATGCC GGGGCAATGG CCGGAGTGGA AACCGGTGAG GGCGACCTGG GACCGGCGGG CATCGGAGCG GCCGCGTCGT ACGCGTCGAC GGCGACCGCG GGCATGGCAG CCCTCTCCTT CGCCCTCGCC GGCAAGCCCG AAGAGACGAA CAAGGCGCTC GGATCCTTCG CGATCGGAGT GGGAGGCGGC CCCGCGGGCG GTATCGCGAT AGTCGTGCAG AGATTCGGAA TCCCGGAGGT AGTCGGAGAG GCCGGTGAGT CGGTTGTTCA CTTGGCTTGG CATCTGATTC CCTGA
|
Protein sequence | MAGTKRAGRA QKRVRHRIRA AGLTAAVLVA QLALGGGGAV AQAAASGGHG GVNVAAPTRD KPASVQLVTP HAVAPKAMAK APAPATAWPA AGSAEARLAA PAFGNQNANT HFAVAEAPMA QAGALPVWVG SAAPGGAAPD AQVRLYSRDA ATAAGVPGLL LSVARSDGAA AAKTTAAATT ATVPARVAVD YTGFADAYGG GWSNRLKLVA MPDCALTTPQ LPACRTTTPL ASVDDTAAHR VTASVPLAAG AQVLALTSTS SDSGGTYTAT SLQTTGSWTA GGSSGAFDYS YPMAVPNVPG GLSPAVSLSY DSQSVDGRTS ATNSQASWAG DGWDYSPGFI ERSFASCADN PAGATKTGDT CWSANDTYTM SLGGRSTQLV DDPVKGWHGQ DDAGDRVQLL TGAVNGDHAG QYWVVTEPSG TQYYFGQNRL KGWAGSDATT ASTFTEPVYF PSTPPDSDPD AACYNATFSS SWCTLAYRWS LDYVVDTHKD AIAYFYNQET NHYSPDNGSK ATAGSLYTRA GTLTKALYGF RDGQVYSASP QPAAEVLFGE NGRCDTAATG CATSTLSSTT AGNWPDVPFD QQCASDTACS TISPTFWTEN ELTSVQTKIL VGTGYQNVDL WQPEYAFPAT GDSTPRALWL SSITHTGQDT LGGLPGGATP TAPPLPPTVF TGLRLANRVH VTDGYEPITR YRMTGVTSES GAVVSVDYQG ASCTGGTPAV DANTTLCYPQ YWTPPLASTP ILDWFNKYVV HDVSTTDPAG GAQPLYVQYA YGNGAWHFDD NPLTQAKYRT WDMWRGTATV TADTGQASDS SPISETVAGY MQGMDQDPNS SGGKTSASVK DSRGEVVTDS DWLVGQQREK IVRNGVNGPA ISDDITDMWA QRTASQSRPG TGLDAVVAYQ VAMAATRGYA PTSTGGTRAT ESDYTYDGYG RVTAVSSLGD TSTGADDSCT RTAYAQDTSR WLLDLPSRVS TLNVACTATP SYPANLVTDT QNLYDLSATV GTANGSGDIT TSQKADTVAA SGVPHYATQA TTTVDEYGRP TSSTDGLGRV TTTSYTPATG AAPTSVTTTA PTPAGQTSAF TTTKTYDPAR GLQLTATDAA GHKGYQTYDP LGRLTASWAA QTNATPTTTL PNAKFTYQVS NGTTPSVVTT SLLNDAGTGY QASETLYDSL MRQRETQSPT PDGNRVVADT TYDSHGRKLL TTDGYYATGA VGPALVKAAQ GTILTQNGFA YDGADRQLKD ITYYAASEKW ENDTTYNGVD ETTSTPPGGA GGDTAASTYT DALGHTVKVV QYNGSSSTDP VATTTSYGYT RDGKTASVAD TSGDTWTYGY NLLGEQVSQS DPDTAGSTFT YDAAGQQITA TDARGKQVTT AYDALGRKTA TYDTTGGATP AAGNKTASWT YDTLAKGYPT SSTTYDNGSA YISTVLGYTT LGQSKGTAVV IPAAEGKLAG TYVQQFTYTA AGRNATTTDS ADGGLPAETI STQYDALGQP YSLTGTNTTY VADLTTDQFG KPSIFTFGAS SNSAYLDLTY DPMTGRLATA ATVATINSSS RTVDDTTYGY NQATGNVTSV SDLQNETGVQ VTDTQCFGYD GLQRLTAAWT ATDRCAATPK AGSSATVGGP NPYWQTFGYD ALGDRVSEVD HNTAGVTAED VSTGYAYPAA GAGATRPNAL SSTTTTGPTG SVSAQFGYDQ AGDTVSITDP VHGDHTLAWS DSGKLQSDTT AGGTSGYVYD ADGNLLIRHD PGTGTLFLGD EQITGTSTAV SQAVRYYSIG GQTVAARTAT AGGATQDVQY LMPDRQGTDV LALDSVTQAV TRREFTPYGG GRGPAPAAWP GGDRGYVGGA PDPTTGIETL GARQYDPVTG RFLSTDPILE ANDPSQMGGY SYAADNPVTD SDPTGKRVED PGTGCNGDAA TVQQCIAGMP RMQKSSTDTH TPGTTTTDHG GSTNGGSDGA SDPGSCSNQS CYLDYVNPSY AAAESAARAA MLSAEAAADL AREQAAAAAA AAAAKAKHHC GLNPFSWGTC LSDVAGASAG AVSTASRDVL NPDCPSGAGH ITCENQNWDF EGSGAWFKKE FLSRDGWEGH GEWFEGVSAK FGFTSVVAYA GAMAGVETGE GDLGPAGIGA AASYASTATA GMAALSFALA GKPEETNKAL GSFAIGVGGG PAGGIAIVVQ RFGIPEVVGE AGESVVHLAW HLIP
|
| |