Gene Caci_6363 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_6363 
Symbol 
ID8337726 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp7319162 
End bp7319830 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content70% 
IMG OID644959464 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003117058 
Protein GI256395494 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.318357 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGGTG TGAGTCCTCG CCCCGCACAA CCCGATATCC GCCGCGCACT CATCGAAGCG 
GCGGCGACGA TCCTCGCCGA ATCCGGGCCC GACGGACTGT CCACCCGGCA GCTGGCCCGA
GAGGTCGGAG TTTCCACTAC TGCTGTCTAC ACCTATTTCG GCGGCATGGA CGACTTGGTA
CGCGCGATGG TGCACGAGGG CTTCGCCCGC CTGAACCGCG CCCTGACCGC CACCGGCGAC
TCGCAGGACC CGGTCGCCGA CGTGGTGCGC CTCGGACGTG TCTATCGCGA GAACGCGCTG
CGGCACAGAC ATCTGTACGC CGTGATGTTC GGCGGGTCGG CCCTGGCCGG GTTCTCCCTG
ACCGACGAGG ATCGCGCGCA CGGGCTGTAC ACCCTCGATC TCCTGGTCGC CGCGATCGAG
CGATGCGTGG TGGCCGGCCG GTTCCGCAGC GGGGACGCGA CGCTGGTCGC GCACGAGTTG
TGGATGTCGA TCCACGGCAT CGTCACGCTG GAGATCGGCG GGTACCTGTT CGAGCCCTAC
GACGCCGACG CGTGCTTCGA CGCCCAGGTG TGCACCTTGC TGGTGGGCTC CGGCGACGGG
CTGGAGCGCG CGCGGCAGTC CATCGCGATG TCCGGCGCGG AAGCCGCGGC CAAGGAGCCC
GCGGCCTAG
 
Protein sequence
MDGVSPRPAQ PDIRRALIEA AATILAESGP DGLSTRQLAR EVGVSTTAVY TYFGGMDDLV 
RAMVHEGFAR LNRALTATGD SQDPVADVVR LGRVYRENAL RHRHLYAVMF GGSALAGFSL
TDEDRAHGLY TLDLLVAAIE RCVVAGRFRS GDATLVAHEL WMSIHGIVTL EIGGYLFEPY
DADACFDAQV CTLLVGSGDG LERARQSIAM SGAEAAAKEP AA