| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4703 |
|---|
| Symbol | |
|---|
| ID | 8336057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 5361878 |
|---|
| End bp | 5363500 |
|---|
| Gene Length | 1623 bp |
|---|
| Protein Length | 540 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644957803 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003115405 |
|---|
| Protein GI | 256393841 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.179545 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGCGC TCGACGACGC CCCCGGCCGC GCGGTCACCG CGCGGCTGCG GGGGGTCCAC
AAGTCCTACG GCCCGGTGCG GGTGCTGGAC CTGCCCGAGC TGGATCTGTA CGCCGGCCAG
GTGGTCGGCG TGGTCGGCGA GAACGGGGCC GGCAAGTCCA CGCTGATGGG CACGCTGTCC
GGCTCGGTGC GGCGCGACGG CGGCGAGATC GAGATCGACG GCTCGGCGCT CGTGCCGGGC
TCCACCGAGG CCGCGGCCTC CCTCGGCATC GCCATGGTCT CCCAGGAGTT CCCGCTGGTC
GGTCAGCTCT CTGTCGCCGA GAACCTGCTG TTGGGACGGC GTCCGCGCGG GTCCCGGCGC
CGGGTGCTGG TGGACCGGGC GGCGCTGCGC CGCGAAGCCA GGGAGATGCT CGGCGAGATC
GGGCTGTCCG CCACGGCGAT CCCGGTGGGG CGCCAGGTGC GGACCCTGCC GGTGCCCACG
CGCCAGATGA TCGAGATCGC CAAGGCGTGG GGGCGGCGGC CGAAGCTGCT GATCCTGGAC
GAGCCGACCT CCTCGCTGGG TCCCGTCGAG GGAGCCCAGG TGCTGCGTCT GGCGCGCGAG
CTCGCGGCGC GCGGGGGCAC GGTCCTGTTC ATCGGCCACC GGCTCGACGA AGTCCGCGAG
GTCAGCGATC GCGTCCTGGT CCTGCGCAAC GGACGCCTGG TCGCCGACCT GCAGCCGGGC
GAGGCCAGCG AAGAGCGCCT GATCCGGGAG ATGGTCGGGG GCGAGGTGAC GCACTCCCGG
CCGAAGGACG AGCCGACCGA TACCTCGGTG CTGCTGTCGC TGCGCGCTCT GACCGCCGAC
GGGCTGGGCC CGGTCGACCT CGATCTGCGC GCCGGGGAGA TCGTCGGCGT CGCCGGGCTG
ATGGGCTCCG GCCGCAGCAG GCTGATCCAC ACCGTCGCCG GCGCGCAACC GGCCACCGGC
GGGACGATGA CGATCGCCGG CGCCGCGTAC CGCCCGCACG GTCCAGGCGA CGGCACCGCC
GCCGGGATCG CGATGATCCC CGAGGACCGC AAGGAACAGT CCCTGGTGGT GTTCGCCCCG
ATCCGGGCCA ACGTCACCAT CCCGATCCTG CGCCGCATCA GCTCCCGCGG CCTGCTCGGT
CCCCGGCGCG AGCGCTCCGA GGCCGAGCGG ATCACCGCGA GCGTCAACGT CCGGATGCGC
TCGGTCGACC AGCCGATCGG CTCCCTGTCC GGCGGCAACC AGCAGCGGGC GATCTTCGGC
CGCGCCTTCG CCACCGAACC GCGCCTGCTG CTGCTGGACG AGCCCACGCG CGGCGTCGAC
GTCGGCGCCA AAGCCGAGAT CTACGAGCTC ATCGACCGCG CCGCCGAGCG CGGCATGGCG
GTGCTGGTCG CCTCCTCCGA GCTGGAGGAG CTGCTGTGGA TCTGCCACCG CGTCGCGGTG
CTGAACCACG GCCGGCTGGT CGAGGTGATC GACCGCGCCG AGGCCACCAA GGAGCGCATC
ATGACCGCCG CCGCGGGCAC CGCCCCGGTC GTGCCGATGT CGGACGAGGT GTTGGAAGAG
ATGTCGGAAG AGGTGTCGGA GGACGCGTCG CAAGACGTGC CAGAACACGG AGACGCACCA
TGA
|
|---|
| Protein sequence | MAALDDAPGR AVTARLRGVH KSYGPVRVLD LPELDLYAGQ VVGVVGENGA GKSTLMGTLS
GSVRRDGGEI EIDGSALVPG STEAAASLGI AMVSQEFPLV GQLSVAENLL LGRRPRGSRR
RVLVDRAALR REAREMLGEI GLSATAIPVG RQVRTLPVPT RQMIEIAKAW GRRPKLLILD
EPTSSLGPVE GAQVLRLARE LAARGGTVLF IGHRLDEVRE VSDRVLVLRN GRLVADLQPG
EASEERLIRE MVGGEVTHSR PKDEPTDTSV LLSLRALTAD GLGPVDLDLR AGEIVGVAGL
MGSGRSRLIH TVAGAQPATG GTMTIAGAAY RPHGPGDGTA AGIAMIPEDR KEQSLVVFAP
IRANVTIPIL RRISSRGLLG PRRERSEAER ITASVNVRMR SVDQPIGSLS GGNQQRAIFG
RAFATEPRLL LLDEPTRGVD VGAKAEIYEL IDRAAERGMA VLVASSELEE LLWICHRVAV
LNHGRLVEVI DRAEATKERI MTAAAGTAPV VPMSDEVLEE MSEEVSEDAS QDVPEHGDAP
|
|---|
| |