| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4157 |
|---|
| Symbol | |
|---|
| ID | 8335511 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 4699982 |
|---|
| End bp | 4702141 |
|---|
| Gene Length | 2160 bp |
|---|
| Protein Length | 719 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644957260 |
|---|
| Product | cellulose-binding family II |
|---|
| Protein accession | YP_003114862 |
|---|
| Protein GI | 256393298 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3534] Alpha-L-arabinofuranosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.894149 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.131999 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCTCG ATCGCAGGCT CAGGGCGAGA TCGGTCGCCC TGACCGCCGC CACGGCTTTG
TCCGCGCTGT CCATCGTCGG AGCGGTCGCG GCTCCGCAGG CGTCCGCCGC CACCGCGGTG
TCGGTGACCG TCAACGGCAC AGCCGGGCTC GGTACCATTC CCGGCGGCGC GATCGGCCTG
AACACCGCCG TCTACGACAG CTATATGAAC GACACCCCGA TCCCGGGTCT GCTCAAGGCC
GCGGGAATCA ATGCTCTGCG CTACCCGGGC GGTTCGTACT CTGACATCTA CAACTGGCAG
ACCAACGTCG CGCAGGGCGG CTACGACGCG CCGAACACGA GCTTCGCGGA CTTCATGGGG
ACCGCGAAGG CTGCCTCGGC CAGCCCGATC ATCACCGTGA ACTACGGCAC CGGGACACCG
GCGTTGGCCG CGTCCTGGGT GCAGAACGCC GCCGTCACCA ACAAGGACGG CGTCGCGTAC
TGGGAGGTCG GCAACGAGGT CTACGGCAAC GGGACCTACG GCGCGAACTG GGAGACCGAC
GCGCACTGCC AGACGTCCTC CGGAACGCCG GTCACCGTCG GCAGCGAGCC TTCGCAGACC
TACGGTTGCG GTCCCTCGGT CTACGCCAAC AATGTCCTGA GTTACATGTC CTCGATGAAG
GCGGTCAGCT CGAACGCCCA CGTCTGCGCG ATCCTGACCA CGCCGGGGTT CTGGCCCGAC
AACGTCACCA ACGCCACGAC CAGCCCGCTT CCCTGGAACC AGACCGTGCT CACGGCGCTC
GGCGCCAAGA CCGACTGCGT CATCGTGCAC TACTATCCCG GCGGCTCGAA CGCGGCCGGG
ATGCTGACCG ACACCAGCGA CATCTCCGGG ATCATCTCGA CGCTGCACTC CCAGATCAGC
CAGTACGCCA AGGTGAACCC GGCGAACGTG CCGATCCTGG TGACCGAGAC CAACTCCAAC
GTGGACATGG ACACCCAGCC CAACGCGCTG TTCGCCGCCG ACATGTACAT GACCTGGCTG
GAGAACGGCG TCGCGAACGT CGACTGGTGG GACGAGCACA ACGGCCCGGG GACCAACCCG
CCGAGCGTCG TCAACGGCGC GCAGGACTAC GGCGACTACG GCATCTTCTC CACCGGCGGC
AACAACAGCG GCGTGACCGA GCCGGCCGCC GAGACCCCGT TCGGGCCGTA CTACGGCATC
GCGATGCTGT CCAAGCTCGG CGGACCCGGC GACACGATGG TGAACAGCAC GTCCTCCAAC
GCGCTGGTCC GCGTCCACGC GGTGCGGCGG GCCGGCGGGA ACCTCGATCT GCTGATCGAC
AACGAGGATC CCACCACCTC CTACTCGGTG AACCTGGCTT ACAACGGGTT CACGCCAGCC
GGTAGCCCGA CGGTCTTCAC CTTCGCGAAC AACGGGAATT CGATCACCAG TGCGACGCAG
AGCTCTGCGT CGTCGGTCAC GGTCGCTCCG TACACGCTCA CGGTCGTACA GGTCCCGGGC
AGCGGCGGGG GAGGTGTGAC AGCACCGGGA GCGCCGGGGC AGCCGGTCGT CTCCGGGCTG
GCGTCGAGCA CGTCCGGCAA CACCACCGGC GTGGCGACGC TGACCTGGCC AGCAGCCACG
GCCGGCACGT ACCCGGTCGC GTCCTACCAG GTCTACCGGC AGAACAGCGG CGGCGGGACA
ACCCTCGCCG GCACGACCAC CACGACGACG CTGAATCTCA GTGGCCTGAC GATCGGCGCG
GGCTACACCT ATGACGTGGT CGCGGTGGAC TCCCACGGCA ACCCGTCGCT GCCCTCGCCA
CCGGTGACGT TCACCGTGCC ACCCCCGGCG ACCGCGAGCT GCGCGGTGCA CTACGCGGTC
AGCTCCTCCT GGTCCGGAGG CTTCGGTGCC GCGATCACGA TCACGAACCG CAGTGCGACC
GCCATCAGTG CCTGGACCCT GAAATTCACC TGGCCCGACC CCGGCGAGGC GGTGCAGAGC
GGCTGGAACG GCACCTGGAG CCAGAGCGGC TCGGCGGTGA CCGTGGTGAA CGCCGCATGG
AACGGCACGA TCGCAGCCAA CGGCGGCACG GTGAGCCTCG GCTTCAACGG CGCGGACACC
GGCCAGGACC CGGCGCCGAC CGTGTTCTCG CTCAACGGGA CGGTGTGCGC GAACAACTGA
|
|---|
| Protein sequence | MPLDRRLRAR SVALTAATAL SALSIVGAVA APQASAATAV SVTVNGTAGL GTIPGGAIGL
NTAVYDSYMN DTPIPGLLKA AGINALRYPG GSYSDIYNWQ TNVAQGGYDA PNTSFADFMG
TAKAASASPI ITVNYGTGTP ALAASWVQNA AVTNKDGVAY WEVGNEVYGN GTYGANWETD
AHCQTSSGTP VTVGSEPSQT YGCGPSVYAN NVLSYMSSMK AVSSNAHVCA ILTTPGFWPD
NVTNATTSPL PWNQTVLTAL GAKTDCVIVH YYPGGSNAAG MLTDTSDISG IISTLHSQIS
QYAKVNPANV PILVTETNSN VDMDTQPNAL FAADMYMTWL ENGVANVDWW DEHNGPGTNP
PSVVNGAQDY GDYGIFSTGG NNSGVTEPAA ETPFGPYYGI AMLSKLGGPG DTMVNSTSSN
ALVRVHAVRR AGGNLDLLID NEDPTTSYSV NLAYNGFTPA GSPTVFTFAN NGNSITSATQ
SSASSVTVAP YTLTVVQVPG SGGGGVTAPG APGQPVVSGL ASSTSGNTTG VATLTWPAAT
AGTYPVASYQ VYRQNSGGGT TLAGTTTTTT LNLSGLTIGA GYTYDVVAVD SHGNPSLPSP
PVTFTVPPPA TASCAVHYAV SSSWSGGFGA AITITNRSAT AISAWTLKFT WPDPGEAVQS
GWNGTWSQSG SAVTVVNAAW NGTIAANGGT VSLGFNGADT GQDPAPTVFS LNGTVCANN
|
|---|
| |