Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_3733 |
Symbol | |
ID | 8335086 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 4207191 |
End bp | 4210214 |
Gene Length | 3024 bp |
Protein Length | 1007 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 644956873 |
Product | transcriptional regulator, LuxR family |
Protein accession | YP_003114476 |
Protein GI | 256392912 |
COG category | [R] General function prediction only |
COG ID | [COG3899] Predicted ATPase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGGTCGT ACTGCCCTGT CCTGATCGGC CGTGCCGAGG AACTGCGGGT GCTCACGAGC GCGCTGTCCG CGGTGCGGGA GGGCACCGGC GGCTCGGTGT TCCTGCTCGG CGAGCCGGGC ATCGGCAAGT CGCGGCTCGC CGAGGAGTGC GTCGACGCGG CGCGCGCCGC CGGCCTGCGG ATCCTGCGCG GTCACTGCGG GCCGCTGGGG GCGGCCACGC CGTTCCGGCC GCTGGTGGAG GCGGTGTCCT CGCAGCTGCG CACCGGCCAC GTGCCGCGCA GCCCTGGCCT GCACCCGTAC CGGGCCACGC TGGGCCGGCT GTTTCCAGAG CTGCGGGTGC CGGGCACTCC CGCGCCGGCC GACCTGGTCG AAGTCTGCGA GGCGCTGCTG CGGTTGCTGG CCGCGTTCGG CGAGGAGAGC GAGGGCTCAG AGACCGGCGA TGCGGGCGCC GGGACCAGCA AAGCCGACGG CGCGCTGCTG GTCCTGGAGG ATCTGCACGA CGCCGACCGG GAGACCCTGG CCGTCGTGGA GTACCTGGTC AACCACCTCC ACGGCGTCAG GGTCCTGCTG GTCGCCACCC TGCGCTCCGA GCCCGGGGCG GCCGCCGACC TGGTGGGCCG GGTCACCCGC CGCCGAGCCG GGACCGTGCT CGAACTCGAT CCGCTGGGGT CCGCCGAAGT CGCCGACATC GCGGCGCGCT GCCTGGCCGC GGCCGGGCCC GGCGGCGTCC CCGCCGCGGT GGCCGAGTAC GTCGAACGCT ACGGCGCGGG CAACCCGTAC CTGGTCGAGG AGCTACTGAG CGACTTGCTC GACGCCGGTC TGCTGCGGGC TACCTCGCAG GGCTGGCGGA CGGCGGGCAA GCCCCAGGTC ACCGTGCCCC GGAGCATCGT CGAGGCACAC GCGCGGCGGC TGGACCGGCT CGACTCCGGC TCCCGGGACC TGCTGCGGAC CGCGGCGCTG CTGGGCCACC GGTTCAGCCT GCCGGCCCTG CAGACCGTTA CCGGCCTGGC CGATCCGGAC CTGTTCGGGC GGGTGCACGT CGCGATCGAC GCCGGGTTCG TGCTGCCGGA CTCCGCGGCT CCGGACTGGT ACTCCTTCCG GCACGCGCTG ACCGCCGAGG CGGTCCGGGC CACCCTGCTG CCCGGCGAGC AGGCGGCACT GGCCCGGCGG GCGGTGGGCG CGCTGGAGGC GGCCGACCCG GCGCTCCCCG ACGAGCGCTG CCACCTGGCC GCGGCCCTGA GCCGGATCGC CGGCAACCCG CGCGCCGCCG CCCGGTACTA CGCCGAGGCC GGCCGCCGGG CCCTGGCCGA CGGCGCCACC GAGACCGCCG TGGCGCTGCT GGAGCACGCC CACGACAACG TGCCGCCGGC CGAGCGCGCG GCCGTGGACG CCGCGCTGAT CGAGGCCCTG ATCGAGGCCG ATCACCTCGA CAGGGCCCTG ACACTCATGG ACACCGCGGA GTACTCGGCC GGGATCGCGA CCGGCCGCCG GATCGCGTTG CACAGCCAGA TCGCGTGGAT CTCGGCGATG GCCGGGCGGC GGCCTGAGGC GGCGGCACAG CTGGCGACGG CTCGCAGGCT GTGGGCCGGC AGCGGGGATG CCGACGGCGA GGGCGACGGC AACGGCGACA GCGACGGCGA CAGTGGCAGT GAACTGACAC CGCCGCCGGA GCTGCTGCTC GCTGAGGCGT ACTGCGTGTT CCTCCAAGGC GACGGCGACG CCGCCCAGCG CCGCACCGAG GCGGAACGAT TCGCCCGGCT GGCCGCCGCC GAGGCCGAGC GCCGGTCCAG TCCGGTGATG GTGTGCCTGG CCTCGCAGCT GTCGGCGCTG CTGGCGCGGG AGCAGGGGTT CGACGTCGCC AACCGGATCC TGGAGCGGAT CCTGGCCGTG GCCGAGGCGA ACGACCTGCC GCTGTGGCGG GCTGAGGCCA TGGTCTGCAT CGCCGGCAAC GATTTCATGA GCACCGGGTC CGGGCATCTG CTGGAGCAGG CTCGCGACAT CTCGTTCCAG ACCGGCAGCG TCTCTCGCGG CTTGGTGATG GAGAACGGCT TGGCGCTGCA CGCCGTCCTC GCCGCCGACC ACGAACGGGC CGGAGAGATC CTGGCGCGGT GCCGGGCCGG CACCATTCAG GTCCGGGGGT TGGGGGACGA GCGGTACCCG GTCCTGGTGG CGGCCATGTC AGCGGCTCAC CGCGGCCTGC GCGCCGCCAT GGATCGGGAA CTGGCGGTGT TCGCAGAGCA CGACGACCCC TCGCCGCTGG TGCCGCTGAA ACTGGGGCTG TGCCGGGCGT TCTGCGCGCT GCTGGAGGAG GACCGCAGTC TGGCGCTGGC CGAATTGGAC GCCTTGGACA CCTGGCTGGA CGCCAATCCG AGCCCGTTCT ATCTGGCCGG CCGGCATGGA TTACGGCCGC TGCTGATGAC GCTGGAAGGA CGCTGGACCC GAGACCGTTA CGAGCAAGCC GCCTCCGGGC CGGGCGCGCG GCTGCGCTGG AACGCGCAGT TCCTGCATCT GGCTGACGCG GTGTTGCTGG GTCGGGAGGG GCGCGCCGAG GCTGCCGCTG CGGCGGTCGA TACCGCCGTG GCCGCCGCGG CTCCGTTTCC GATGGCCAGG GCTCTTGGTC TGCGGCTGGT CGGTGAGGCT GCGGTGGCTG ACGGGTGGGG CGAACCCGAT CGGTGGTTGC GCACCGCCGA GGAGTACTTC CACGCACGGG ACGTGCATCC GGTTGCCGGC CGGTGTCGGG CTCTGCTTCG GCAAGCGGGA GTGCGGGTGG CGCAGCGGCG CGACAGCTCG GAGCAGATTC CGGCGGTTCT GCGGGAGCGC GGCGTGACAG TACGCGAATA TCAGGTCTTT GCTTTGCTGC CCGGGCGCCC GACGAACAAG GACATCGCGC GGTGGCTGGT CATCTCCCCG CGGACCGTCG AGAAGCATGT CGCCAGCCTG ATCATCAAGG CTGGGCAGGC GGATCGGACC AATCTGTGCG CTTACGCGGC GGAGCTGGCA CGAGGTGGCG CTCGCCAGGG CTGA
|
Protein sequence | MRSYCPVLIG RAEELRVLTS ALSAVREGTG GSVFLLGEPG IGKSRLAEEC VDAARAAGLR ILRGHCGPLG AATPFRPLVE AVSSQLRTGH VPRSPGLHPY RATLGRLFPE LRVPGTPAPA DLVEVCEALL RLLAAFGEES EGSETGDAGA GTSKADGALL VLEDLHDADR ETLAVVEYLV NHLHGVRVLL VATLRSEPGA AADLVGRVTR RRAGTVLELD PLGSAEVADI AARCLAAAGP GGVPAAVAEY VERYGAGNPY LVEELLSDLL DAGLLRATSQ GWRTAGKPQV TVPRSIVEAH ARRLDRLDSG SRDLLRTAAL LGHRFSLPAL QTVTGLADPD LFGRVHVAID AGFVLPDSAA PDWYSFRHAL TAEAVRATLL PGEQAALARR AVGALEAADP ALPDERCHLA AALSRIAGNP RAAARYYAEA GRRALADGAT ETAVALLEHA HDNVPPAERA AVDAALIEAL IEADHLDRAL TLMDTAEYSA GIATGRRIAL HSQIAWISAM AGRRPEAAAQ LATARRLWAG SGDADGEGDG NGDSDGDSGS ELTPPPELLL AEAYCVFLQG DGDAAQRRTE AERFARLAAA EAERRSSPVM VCLASQLSAL LAREQGFDVA NRILERILAV AEANDLPLWR AEAMVCIAGN DFMSTGSGHL LEQARDISFQ TGSVSRGLVM ENGLALHAVL AADHERAGEI LARCRAGTIQ VRGLGDERYP VLVAAMSAAH RGLRAAMDRE LAVFAEHDDP SPLVPLKLGL CRAFCALLEE DRSLALAELD ALDTWLDANP SPFYLAGRHG LRPLLMTLEG RWTRDRYEQA ASGPGARLRW NAQFLHLADA VLLGREGRAE AAAAAVDTAV AAAAPFPMAR ALGLRLVGEA AVADGWGEPD RWLRTAEEYF HARDVHPVAG RCRALLRQAG VRVAQRRDSS EQIPAVLRER GVTVREYQVF ALLPGRPTNK DIARWLVISP RTVEKHVASL IIKAGQADRT NLCAYAAELA RGGARQG
|
| |