| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3590 |
|---|
| Symbol | |
|---|
| ID | 8334943 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 4004843 |
|---|
| End bp | 4006366 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644956733 |
|---|
| Product | Alpha-N-arabinofuranosidase |
|---|
| Protein accession | YP_003114336 |
|---|
| Protein GI | 256392772 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3534] Alpha-L-arabinofuranosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.497097 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGCG CGCACATCGT GCTCGACAAG CAGGCGGTCG TCGCCCCGGT CCGGCGGCGC
ACCTTCGGCT CGTTCGTCGA GCACCTCGGA CGCTGTGTCT ACACCGGGAT CTACGAGCCG
GACCATCCGA GCGCGAACGA CGACGGGTTC CGGATGGACG TCGTGGACCT CGTCCGGGAG
CTCGGCAGCA CGACGATCCG CTATCCCGGC GGCAACTTCG TCTCCGGCTT CCGCTGGGAG
GACTCGGTCG GTCCGCGCGG GAAGCGCCCG GTACGGCGCG ACCTCGCGTG GCATTCGCTG
GAGTCCAACC AGGTCGGTCT CGACGAGTTC GCCGCGTGGC TCAAGCTCAC CGGCTCGGAG
CTGATGCTCG CGGTGAACGT CGCCACGCGG GGGATCCTGC CCGCCCTGGA CCTGCTGGAG
TACGCCAACC ATCCCAGCGG CACGGCGCTG TCGGATCTGC GGATCGCCAA CGGCGCGCCG
GATCCGCACA ACGTGCGCAT GTGGTGCCTC GGCAACGAGA TGGACGGACC CTGGCAGACC
GGCTTCATGT CCGCGGAGGA CTACGGCAAG ATCGCCGCCC GCACCGCCGC GGCGATGAAG
ATGGCTGACA AGGATCTCGA ACTCGTCGTC TGCGGCTCCT CCGGATCGGG GATGCCGACG
TTCGGCGACT GGGAGCGCAC GGTCCTGGAG CACAGCTATG ACCATGTCGA CTACGTGTCC
TGCCATGCCT ACTACCAGGA GCTCGACGGT GATCTCGGCT CCTTCCTGGC TTCGGCGCTG
GACATGGAGT ACTTCATCGA CACGGTGATC GCGACCGCCG ACCATGTCGG CTACAAGAAG
CGTTCCAGCA AGAAGATCGA CATCTCCTTC GACGAATGGA ACGTCTGGTA CCTCAAGGAG
CACCAGGAGT CCGAGAAGTC CAAAGAGGCC GACAACGAGT GGCGTCACGC GCCCCGGCAG
CTTGAGGACG TCTACACGGT GGCGGACGCC GTCGTGGTCG GCAACCTGCT GATGACGCTC
CTCAAGCGCG GCGACCGTGT CACGTCGGCG TCGCTCGCGC AGCTCGTCAA CGTGATCGCA
CCGATCATGA CCGAGCCCGG CGGACCGGCT TGGCGGCAGA CGACCTTCCA TCCCTTCTCC
ATCACCAGCC GGCTCGCCGC CGGGGAGGTG ATCCGGCCGG TGATCGACGC GCCGACGTAT
ACGACGGCAC GATATGGCGA GGCGTCCGTC GTCGACGCGG TGGCGACCGT GGATGGGGAT
CGGGCCGCGG TCTTCCTCGT CAACCGCGAT CTGACGCAGA GCGCGCAGGT CACGGTCGAC
GTGCGCAGCC TTGGTCTGTC CCGTGTCCTC GAGGCGCTCA CGCTTGCCGA CTCCGACGTC
TACGCGAAGA ACACGCTCGC CGAGCCTCTG CGTGTGGTTC CGCGGGCGAA CACCGGCGCG
ACGCTGTCCG ACGGTGTGCT CACCGTCGAA CTGCCGCCGG TTTCGTGGTC GGCGATCGCA
CTCGGTCAGA GTGCGGGCGA CTGA
|
|---|
| Protein sequence | MPRAHIVLDK QAVVAPVRRR TFGSFVEHLG RCVYTGIYEP DHPSANDDGF RMDVVDLVRE
LGSTTIRYPG GNFVSGFRWE DSVGPRGKRP VRRDLAWHSL ESNQVGLDEF AAWLKLTGSE
LMLAVNVATR GILPALDLLE YANHPSGTAL SDLRIANGAP DPHNVRMWCL GNEMDGPWQT
GFMSAEDYGK IAARTAAAMK MADKDLELVV CGSSGSGMPT FGDWERTVLE HSYDHVDYVS
CHAYYQELDG DLGSFLASAL DMEYFIDTVI ATADHVGYKK RSSKKIDISF DEWNVWYLKE
HQESEKSKEA DNEWRHAPRQ LEDVYTVADA VVVGNLLMTL LKRGDRVTSA SLAQLVNVIA
PIMTEPGGPA WRQTTFHPFS ITSRLAAGEV IRPVIDAPTY TTARYGEASV VDAVATVDGD
RAAVFLVNRD LTQSAQVTVD VRSLGLSRVL EALTLADSDV YAKNTLAEPL RVVPRANTGA
TLSDGVLTVE LPPVSWSAIA LGQSAGD
|
|---|
| |