| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_2620 |
|---|
| Symbol | |
|---|
| ID | 8333969 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 3002645 |
|---|
| End bp | 3003784 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644955772 |
|---|
| Product | ROK family protein |
|---|
| Protein accession | YP_003113378 |
|---|
| Protein GI | 256391814 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1940] Transcriptional regulator/sugar kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.467563 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCACTGG AGCGTCCCGA ACTGCCCGAC AGCGCCCGCG CGGTGTTCCG CGCCCTGGCC
GTGGACGGCC CGGCGAGCAG ACCGGCGCTC AGCGAGGCGC TGGGGATCTC GAAGGTCACC
ATGTCGGCGG CGATCGGCGA GCTGGAATCG CTCGGTCTGG TCCGCAGCCA GGGCATGACA
CGGGGCGCGA CCGGCCGCAG CGCAGTGCTC TACACGTTGG CTCCGGGCGC GGGACACGTC
CTGGGCGTCG AGGTCGGCGC CACCCGCGTG CGCGTCGCCG CCCACAGCCT GGACGGCCTG
CGGATCAGCA CCCGTACCGA GGCTCTGGCC AGCCACCACC GCCAGGTCAC CACCGACGCC
ACAGCGGTGG CGATCGCCCT GGTCGAAACC GTGCGCGCCG AGGTGGGCGA GGACTACGGA
CCCCTGCGCG GCGTGGTGAT CGCCGCGCCG ACGCTGCCCA AGGCCGGCCC GGCGGGACGT
CAGCTGCTGG ACGGCGTGCA ACTGCTCACC ACCGAGCTGC CGGTACCGCC GGAGGTGCCG
ATGTCGGTGG AGAACAACGT GAACTGCGCA GCGGTGGCCG AACACCGCAT CGGCGTCGCC
CGCGACTACG GCACCTTCGC GTACCTGCAG ATCGGCGTGA AGATCGGCGT CGGCCTGATC
ATCGACGGAG CCCTCCTGCG CGGCACGCAC GGCGCGGCCG GCGAGGTCGC GATGGTGCCC
TTCCCCTGGG CGCCGGGCGT CCGACCGCGG CGCGCCGGAC TGGAGGAGTA TCTGGGTTCG
GACGCACTGA TGGAACGCTG CGCGGCAGCC TGGCCCACCG GCGGCACCCC GGTCCCGAAG
GACGCCGTGG CACTGTTCGA CGCGGCAGCC GGCGGCGACG CCCACGCCCG CCGCGTCGTC
GACGAGCACG CCCGCGACAT CGGAGCCCTG GTGGTCTCGG TCCTCGCCGT CTTCGATCCA
GGACTGATCG TCCTCGGCGG CGGCGTCGGA CAGAACCAGC TGGTACTGCC AGAAGTACGC
CGCACGGTGC AGGCTCTCGC GTGGGACACC GAGGTGACGG CCGGCGCCTT GGGCGACCAC
GCCACGCTGC TCGGCGCCGT GCACACGGCT ATAGGGCGCG CGCTGGACGC GATCGCTTAG
|
|---|
| Protein sequence | MPLERPELPD SARAVFRALA VDGPASRPAL SEALGISKVT MSAAIGELES LGLVRSQGMT
RGATGRSAVL YTLAPGAGHV LGVEVGATRV RVAAHSLDGL RISTRTEALA SHHRQVTTDA
TAVAIALVET VRAEVGEDYG PLRGVVIAAP TLPKAGPAGR QLLDGVQLLT TELPVPPEVP
MSVENNVNCA AVAEHRIGVA RDYGTFAYLQ IGVKIGVGLI IDGALLRGTH GAAGEVAMVP
FPWAPGVRPR RAGLEEYLGS DALMERCAAA WPTGGTPVPK DAVALFDAAA GGDAHARRVV
DEHARDIGAL VVSVLAVFDP GLIVLGGGVG QNQLVLPEVR RTVQALAWDT EVTAGALGDH
ATLLGAVHTA IGRALDAIA
|
|---|
| |