| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_2500 |
|---|
| Symbol | |
|---|
| ID | 8333849 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 2826934 |
|---|
| End bp | 2827695 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644955653 |
|---|
| Product | transcriptional regulator, DeoR family |
|---|
| Protein accession | YP_003113259 |
|---|
| Protein GI | 256391695 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.134213 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACGCGG AGGAGCGCCA GCAGGCCATC TTGGCGAAGG CGCGGGCGCA CGGGCGGGTC
GACGTCGTGG GGCTCGCCGA GGAGCTGGCG GTCACCACCG AGACCATCCG GCGCGACCTG
ACGGTGCTGG AGCGCGCCGG GGTCGTGCGG CGCGTGCACG GCGGCGCGAT CCCGGTCGAG
CGCCTCGGAT TCGAACCGGG CGTGGCGGCG CGGGACGCGG TGATGACCGC GGAGAAGGAG
CGGATCGCCA AGGCCGCGCT CGCCGAGCTG CCCGAGGAGG GCTCGGTCAT CATCGACGCC
GGGACCACGA CCGGGCGCCT GATCGAGATC CTGCCGGTGG ACCGGGAACT GACCGTCATC
GTCAACGCGC CGGCCTTCGC CGCACAGCTG GCGACCAGAT CCAATCTCAC GGTCCTGATG
CTCGGCGGGC GCATCCGCGG CCGCACCATG GCGGCGGTCG ACGACTGGGC TCTGGCTCCG
CTGTCGCAGC TGTGCGTGGA CGTCGCCTTC GTGGCGACCA ACGGCGTCTC GGTCGGGCGC
GGGCTCACCA CCCCCGACAT CACCGAGGCC GCGGTGAAGC GCGCGATGAT CGGCGCGGCG
CGGCGCACCG TGCTGCTCGC CGACCACAGC AAGGTCGGCA ACGACTGCAT GGCGCGCTTC
GGCGGACTGG CCGACGTCGA CCTGTTCATC ACCGACACCG GACTGGACGA GGAGACCGCC
GGGGAGTTCG GCGACGCGGG CATCCGGGTG ATGCGTACCT AG
|
|---|
| Protein sequence | MYAEERQQAI LAKARAHGRV DVVGLAEELA VTTETIRRDL TVLERAGVVR RVHGGAIPVE
RLGFEPGVAA RDAVMTAEKE RIAKAALAEL PEEGSVIIDA GTTTGRLIEI LPVDRELTVI
VNAPAFAAQL ATRSNLTVLM LGGRIRGRTM AAVDDWALAP LSQLCVDVAF VATNGVSVGR
GLTTPDITEA AVKRAMIGAA RRTVLLADHS KVGNDCMARF GGLADVDLFI TDTGLDEETA
GEFGDAGIRV MRT
|
|---|
| |