| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_2031 |
|---|
| Symbol | |
|---|
| ID | 8333375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 2300510 |
|---|
| End bp | 2301838 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644955181 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_003112792 |
|---|
| Protein GI | 256391228 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.298737 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCAATGA GGACAACACG GCGTTCGGCA CTGCGGCTGG GCATCGGGGC CCTCGCGGTC
GCGGTGACCG GCGGATGCGC GACCGGCGGC GGGAAGAAGA CTCCGGCGCC GGCTGTGAAG
ACCGGCGCCG CGGCTCAGGT GGGCGGGACC ATCACGGTGT GGTCCTGGGA CGTGGCGGCC
AAGGCGCTCA AGCGGCTGGC GCCCGCGTTC GAGCAGCAGC ACCCGGGCGT GAAGGTGAAC
GTCGTCGACA TCGGCTACGA CAACGCCTAC GACAAGATCA CCGTCGGCCT GAAGTCCGGC
TCCGGACTCC CCGACGTCCT GCAGGTCGAG GGCCCGAAGA TGCAGAGCTA CATCGGCACC
TTCCCCAGCG GCTTCTACGA CCTCAGCACC CTGGCGGCAC CGCTGAAAGC GCAGTTCAAC
GCCGCCGCCT GGGCCACCGG CACGGACGCG AACGGCAAGG TCTACGCGCT GCCCTGGGAC
ATCGGGCCCT GCGGCGTGTT CTACCGGACC GACATCTTCC AGCAGGCCGG CGTCGACCCC
GCGTCGATCC AGACCTGGGA CGACTACATC GCCGCCGGCG TGCGGATCAA GGCCAAGACC
GGCAAGAAGC TGCTGGTGGT GGACCCCACC GGCGACAGCA CGTTCCCGAT GATGCTCCAC
CAAGAAGGAC AGGGCTACTT CGTCGGCGAC AAGATCGCCG TCGACACCCC GGCGGCGGTG
AAGGCCATGA CCGTCATGAA GGAACTCAAC GACAAAGGCC TGGTCGACTA CGAAAAGGGC
TGGGACGCCC TGGTCGCCGC CACCAAGGAC GGCACCGTCG CCACCACCCC GACCGCGGTC
TGGTGGTCCG GCACCCTCAC CGACGAGATG CCGGAGCTGA AGGGCAAGTT CGCCGCGATC
CCGCTGCCCG CCTTCACTTC CGGCGGCATC CGTACCTCCA ACAACGGCGG CTCCCTGCTC
ACCATCTCAG CGCAGAGCAA GAACTCGGCG ACCGCCTGGG CGTTCATCCA GTTCGTCCTG
GCCGACGCCG ACAACCAGGT CTCGATGCTG AAGAACGAAG GCATCTTCCC CGCCTTCGAG
CCGGCCCTGT CAGACCCCTA CATCACCGGC CCGCAGGACT ACTACGGCGG CCAAACCACC
TTCAAGATCT TCGCCGACCT GGCCAAGAAC ATCCCGGCAG TGCAGTACAC CGCCGACTTC
TCCAAAGCCT CCGACCTGAT CAACACCGCC ACCGGCGCGG TGATGCAAGG CGGCAAGGAC
CCGAAGTCCG CCCTGGACTC GGCAGCGCAA CAGATCGCCT CCGCGACCAA TCGGCAGATC
GCGCACTAG
|
|---|
| Protein sequence | MSMRTTRRSA LRLGIGALAV AVTGGCATGG GKKTPAPAVK TGAAAQVGGT ITVWSWDVAA
KALKRLAPAF EQQHPGVKVN VVDIGYDNAY DKITVGLKSG SGLPDVLQVE GPKMQSYIGT
FPSGFYDLST LAAPLKAQFN AAAWATGTDA NGKVYALPWD IGPCGVFYRT DIFQQAGVDP
ASIQTWDDYI AAGVRIKAKT GKKLLVVDPT GDSTFPMMLH QEGQGYFVGD KIAVDTPAAV
KAMTVMKELN DKGLVDYEKG WDALVAATKD GTVATTPTAV WWSGTLTDEM PELKGKFAAI
PLPAFTSGGI RTSNNGGSLL TISAQSKNSA TAWAFIQFVL ADADNQVSML KNEGIFPAFE
PALSDPYITG PQDYYGGQTT FKIFADLAKN IPAVQYTADF SKASDLINTA TGAVMQGGKD
PKSALDSAAQ QIASATNRQI AH
|
|---|
| |