Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_1946 |
Symbol | |
ID | 8333289 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 2201182 |
End bp | 2202951 |
Gene Length | 1770 bp |
Protein Length | 589 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644955095 |
Product | aspartate aminotransferase |
Protein accession | YP_003112707 |
Protein GI | 256391143 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.346248 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.0292973 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCGCCA CCACTCCGGA GAAGAAGAGC GCCGCGCGCG CCAAGGCTGG CAGCGCCAGG AGCGCCAAGA GCGCTAGGGG CGCCACCGCC AAGAACAACA CCGCCGCTCC GCGCAAGCGT GTCCCCTCCA CGGTCACGTC GGCGGGCCTG TCCCGCGGCA AGATCAAGGA GTGGTCCGCC CTGAGTCCGT TCGAGCTCAA GGGTGAGCTG ATCGCGCTGG CGGCCGACAC GCACAAGAAG TCGGCCGCGC AGATGCTCAA CGCCGGGCGC GGGAACCCGA ACTGGATCGC GACCGGGCCG CGCGAGGCGT ATCTGGCGCT GGGTGCCTTC GCGCTGCAGG AGTCGCGGCG GGTCTGGACC ATGGACAACC TCGGCGGGAT GCCGGAGGTG GCCGGGAGCG GCGTGCGCTT CGACCGCTTC TGCCTGGCGA ATCCGGGGAT GACCGGGGTG CGGCTGCTGC GCGACATGGT GGACTACGGC GTCACCCAGC TGAAGTTCGA CGCCGACGCG TGGATCGGCG AGCTCACCGA CGCCTGGATC GGCGACCACT ACCCGGACCC GCCGCGGGCG CTCAAGCACT GCCAGAAGGT CGTGCGCGCC TATCTGGCCG AGGAGATGTA CGGCGGAAAG ACGCCCGGCA AGGTCGACGT CTTCCCGACC GAGGGCGGCA CGGCGGCGAT GTGCTACCTG TTCGACACGC TGGTCACCAA CGGCATCCTG CACCCCGGCG ACACCATCGC CCTGATGACG CCGATCTTCA CGCCCTACAT CGAGATCCCC GAGCTGGAGC GTTACTCCTT CAACGTAATC CAGGTGAAGT CGGACATGAT GACCGAGGAG GGCGTCCACA TGTGGCGCTA CCCCGACTCC GAGGTCGACC GGCTGGCGGA CCCGAAGGTC AAGGCCGTGA TGCTGGTGAA CCCCTCGAAC CCGCCGTCGA TGGCGATGTC CGACCGGGTC CGCGACCGCA TCGCCGACAT CATCCGGACC AAGAACCCGA ACCTGGCGAT CATCACCGAC GACGTCTACG GCACGTTCGT CCCCGGCTTC CGCTCCCTGG CCGCGACCTG CCCGCGCAAC ACGGCGCTGG TCTACTCCTG GTCCAAGCAC TACGGCGCGA CCGGCCACCG CCTCGGCGTG ATCGCGGTGG CCGAGGACAA CGTCTTCGAC CAGATGCTCG CCAAGCTCCC GAAGGCGAAG AAGGACGAGC TGCGCCGGCG TTACAGCACC CTGACTCTGC ACCCTGAGAA GACGAAGTTC ATCGACCGCC TGGTCGCCGA CAGCCGCGCG GTCGCGTTGA ACCACACCGC GGGCCTGTCC ACCCCGCAGC AGACGATGAT GATGCTGTTC TCCCTGTTCG ACCTGCTGCC GGAGGGCCAG GAGTACAAGG AGCTGCTGCG CACGATCGTC CACCGCCGCC TGGACCTGCT GATGGAGGGC ATCGGCGTCC ACCACATCAG CGACGACCCG GACCGCGCCT GCTACTACGT CGAGCTGGAC ATCCTCGCCG AGGCCGAGGC CTTCGAGAGC CGGGAGTTCG CCGACTTCCT GATGGAGACC TACGAACCCA CCGACGTGGT GTTCCGCCTG GCGCATCAGG CCTCTGTCGT GCTGCTGAAC GGCGGCGGCT TCGACGGACC GGGATGGTCG GTGCGGGTGT CGCTGGCGAA CCTGGACGAC TTGGACTACC TGAAGATCGG GCATCACCTG CACGCGATCA TGGAGGAGTA CAAGGAAGAG TGGCTGAAGA CCAAGACCAA GAAGAAGTGA
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Protein sequence | MTATTPEKKS AARAKAGSAR SAKSARGATA KNNTAAPRKR VPSTVTSAGL SRGKIKEWSA LSPFELKGEL IALAADTHKK SAAQMLNAGR GNPNWIATGP REAYLALGAF ALQESRRVWT MDNLGGMPEV AGSGVRFDRF CLANPGMTGV RLLRDMVDYG VTQLKFDADA WIGELTDAWI GDHYPDPPRA LKHCQKVVRA YLAEEMYGGK TPGKVDVFPT EGGTAAMCYL FDTLVTNGIL HPGDTIALMT PIFTPYIEIP ELERYSFNVI QVKSDMMTEE GVHMWRYPDS EVDRLADPKV KAVMLVNPSN PPSMAMSDRV RDRIADIIRT KNPNLAIITD DVYGTFVPGF RSLAATCPRN TALVYSWSKH YGATGHRLGV IAVAEDNVFD QMLAKLPKAK KDELRRRYST LTLHPEKTKF IDRLVADSRA VALNHTAGLS TPQQTMMMLF SLFDLLPEGQ EYKELLRTIV HRRLDLLMEG IGVHHISDDP DRACYYVELD ILAEAEAFES REFADFLMET YEPTDVVFRL AHQASVVLLN GGGFDGPGWS VRVSLANLDD LDYLKIGHHL HAIMEEYKEE WLKTKTKKK
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