Gene Caci_1514 details

Gene Information

• Locus tag: Caci_1514
• Symbol: rimM
• ID: 8332853
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Catenulispora acidiphila DSM 44928
• Kingdom: Bacteria
• Replicon accession: NC_013131
• Strand: +
• Start bp: 1719174
• End bp: 1719737
• Gene Length: 564 bp
• Protein Length: 187 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 644954660
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_003112276
• Protein GI: 256390712
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 0.621384
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 0.167537
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGAGCCCTG ACGTTGAGAA CCCCTCCGGC CGGCCCGAGG CGCTGCGCCT CGTGGTCGGC 
CGGATCGGTC GTGCCCACGG CATCCGCGGC CAGGCCACCG TCGAGGTCCG CACCGACGAC 
CCCGAGCTGC GCTTCGCCCC CGGCTCCCGG CTGCTGACCG AGCCGGCCGA GCGCGGCCCG 
CTCGTGGTCA CCGACATGCG CTTCCACAGC GGCATCCTGC TGCTGGCCTT CGAGGGCGTG 
GCGGACCGGA ACGCCGTGGA GGCCCTGCGC AACACGATCC TGGTCGTCGA AGCGGACCCG 
GACGAGACCC CGGAGGACCC CGAAGAGTTC TACGATCATC AGCTCGTCGG CCTGCCCGTC 
GAGCTGGCGG ACGGAACCGT GCTCGGGGAG ATCGCCGACC TGCTGCACCT GCCGGGGCAG 
GACGTCCTGG CCGTCAAGCG TCCGGACCGT CCCGAGGTGC TGATCCCGTT CATCAAGCAG 
TTCGTCCCCG TAGTGGACGT CGCCAACAAG CGGATCGTCG TCGATCCGCC GGCCGGGCTG 
CTGGACCTGG ACAGCGTCGA ATAA 

 

Protein sequence

MSPDVENPSG RPEALRLVVG RIGRAHGIRG QATVEVRTDD PELRFAPGSR LLTEPAERGP 
LVVTDMRFHS GILLLAFEGV ADRNAVEALR NTILVVEADP DETPEDPEEF YDHQLVGLPV 
ELADGTVLGE IADLLHLPGQ DVLAVKRPDR PEVLIPFIKQ FVPVVDVANK RIVVDPPAGL 
LDLDSVE