Gene Caci_1085 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_1085 
Symbol 
ID8332420 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp1229251 
End bp1229757 
Gene Length507 bp 
Protein Length168 aa 
Translation table11 
GC content70% 
IMG OID644954233 
ProductCupin 2 conserved barrel domain protein 
Protein accessionYP_003111852 
Protein GI256390288 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0662] Mannose-6-phosphate isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCACGC ACCTGCCTGT TGTCGTCAAC GTCGCCGACG CGCCGTCGAA CCGCCGCCGC 
GGCGGTGATC TGCGGGCGAT GCTCACGCCG TCCGCCGTCG GCGCGACGAG CGGCTTCATG
GGACTGGCCA TCGTCGAGCC GGGCGAGCGC ATCGGCGAGC ACTACCACCC CTACTCCGAG
GAGTTCGTCT TCGTCGTCTG CGGCGAGCTG ATGGTCGATC TGGACGGCGT GCCGCAGCCG
CTGCACGCCG ACCAGGGCAT GATGATCCCG ATCGGCATGC GCCACCGGTT CCGCAACGTC
GGCACGACCG AGGCGCGCCT GGTGTTCCAC CTCGGTCCGC TGGCTCCGAG GCCGGAGCTC
GGCCACGTGG ACACCGAGCA GACCGAACAG ACCGAACAGA CCGAACAGAT CAAGCAGGCC
GAACAGACCA TCGAGCAGCC GGTCCACCGG CACGTCGGCC AGCCGCCGCA CGCGGACGCG
CCCGAACCCG CGGAGGCCGT CCGATGA
 
Protein sequence
MTTHLPVVVN VADAPSNRRR GGDLRAMLTP SAVGATSGFM GLAIVEPGER IGEHYHPYSE 
EFVFVVCGEL MVDLDGVPQP LHADQGMMIP IGMRHRFRNV GTTEARLVFH LGPLAPRPEL
GHVDTEQTEQ TEQTEQIKQA EQTIEQPVHR HVGQPPHADA PEPAEAVR