Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_5017 |
Symbol | |
ID | 3520190 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 5332946 |
End bp | 5333581 |
Gene Length | 636 bp |
Protein Length | 211 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 637287456 |
Product | polysaccharide deacetylase family protein |
Protein accession | YP_271656 |
Protein GI | 71279729 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.910146 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGAAATA AAATTATATA TTTCATACGA TCTAAGCTCT TGCCTGATAG CTTGTTTTTG ATCAATGGGA AAAGAGAGTC TAAATCACTT TATTTAACTT TTGACGATGG TCCTGTTCAA GGTGTCACTG AAGAGTTACT TGAATTACTT GCACAACATA AAGTAAAAGC TACTTTTTTT ATTATTGGCT CTCGCATCAG CAAATCATCG GATTTACTAA AAAAGATACA TCAACAAAAA CATACAATTG CAAATCATTC ATACAGCCAC CCTAATTTCA CTAAGTTATC AAGTGAAACA ATGCTTGAAC AAATAATCAC AACAAATGAG CTAATTAGGG CAACTACTCA ACAATGTTGT CGATTATTTC GCGCCCCCCA AGGCCGCTGG AGTATCAGGT TACTGTTTAA GTTATTTCGT TTAAAAATGA CAGCAGTACA TTGGAGTCGA GACTCTATGG ATTTTCTTAA AGAGCAACCA GAAAAAATTG TGAAACGTTT TATTGATGAG CCAGTAAAGA ATGGCGACAT TATATTATTT CATGATGATA ACTCTCGTTG TATCGAGGCG TTAAAAACCT TAATACCCCA TTGGCATTCT CAAGGTTTTA GTCTCAACGC ATTGGAGAAT AAATAA
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Protein sequence | MRNKIIYFIR SKLLPDSLFL INGKRESKSL YLTFDDGPVQ GVTEELLELL AQHKVKATFF IIGSRISKSS DLLKKIHQQK HTIANHSYSH PNFTKLSSET MLEQIITTNE LIRATTQQCC RLFRAPQGRW SIRLLFKLFR LKMTAVHWSR DSMDFLKEQP EKIVKRFIDE PVKNGDIILF HDDNSRCIEA LKTLIPHWHS QGFSLNALEN K
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