| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4595 |
|---|
| Symbol | pckA |
|---|
| ID | 3522894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 4849639 |
|---|
| End bp | 4851249 |
|---|
| Gene Length | 1611 bp |
|---|
| Protein Length | 536 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637287034 |
|---|
| Product | phosphoenolpyruvate carboxykinase |
|---|
| Protein accession | YP_271242 |
|---|
| Protein GI | 71282420 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1866] Phosphoenolpyruvate carboxykinase (ATP) |
|---|
| TIGRFAM ID | [TIGR00224] phosphoenolpyruvate carboxykinase (ATP) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.730066 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCC CGAAAAACTC AATTGATTTG TCACAATACG GCATCGACGA TGTTAACGAA
GTTGTTTATA ACCCATCGTA TGAGTTACTT TTTAGTGAAG AAACTAAAGC TGGCCTTGAG
GGCTTTGATA AAGGCATAGT AACTGAGCTT GGTGCAGTTA ATGTAGACAC GGGGATATTT
ACCGGTCGCT CTCCTAAAGA TAAGTATATT GTTCGCGATG ATGTAACTCG CGATACAGTA
TGGTGGTCTG ATCAAGGTAA AAATGATAAT AAGGCTATGA CTCCTGAAAC ATGGGATCAC
TTAAAAGGCT TAGTAACTAC ACAACTTTCT GGCCAACGTT TATTTGTTGT TGATACTTTT
TGTGGTGCTG ATGAAGCAAC ACGTTTAAAA GTACGTTTCA TTACACAAGT AGCTTGGCAA
GCACATTTCG TTAAAAACAT GTTCATTCGT CCTACCGATG CAGAACTTGA AAATTACGAA
CCCGATTTCG TGGTAATGAA TGGTGCGAAA ACAGTTAATG ATAAATGGGA AGAGCAAGGT
TTAAACTCAG AGAACTTTGT TGCTTTCAAC TTAACTGAAA AAATTCAATT GATTGGCGGT
ACTTGGTACG GCGGCGAGAT GAAAAAAGGT ATGTTCTCAA TGATGAACTA CTACCTTCCA
TTACAAGGCA TTGCTTCAAT GCATTGTAGT GCAAACGTTG GTGAAGATGG TGACACTGCT
ATCTTCTTCG GTTTGTCTGG CACAGGTAAA ACAACACTTT CTACCGATCC TAAACGTCAA
CTTATCGGTG ATGATGAACA CGGTTGGGAT GACAATGGAG TATTTAACTT TGAAGGTGGC
TGTTACGCTA AAACAATCAA CCTAAGCAAA GAAAACGAAC CTGATATTTA CAATGCCATT
CGTCGTGACG CTTTACTAGA AAACGTTACG GTTGATGCAA ATGGTAAAAT CGATTTTGAT
GATAATTCAA AAACAGAAAA CACACGTGTT TCTTACCCAA TTCATCATAT TGATAACATT
GTTAAGCCTG TTTCACGTGC TGGTCATGCT AAAAAAGTTA TCTTCTTAAC GGCTGATGCT
TTTGGTGTTT TACCACCCGT AGCTAAATTA ACACCAGAAC AAACAGAATA TTACTTTCTT
TCAGGTTTTA CCGCTAAATT AGCAGGTACT GAACGTGGTA TTACTGAACC AACACCAACT
TTCTCAAGTT GTTTTGGAGC AGCGTTCTTA AGCTTACACC CTACGCAATA TGCTGAAGTT
TTACATAAGC GTATGGATGA TGCTGGCGCT GAAGCTTACC TTGTAAACAC TGGCTGGAAT
GGTACTGGCA AACGAATTTC TATCAAAGCA ACGCGTGCTA TTATTGATGC AATCTTAGAT
GGTTCAATTG ACAATGCTGA AACTGAAACC GTACCGTTTT TCAACTTAGA AGTACCTAAA
GTAATTGCTG GCGTTGAGGG AGATATCCTT GATCCTCGTA ATACTTATGA AGATCCAAGT
GTTTGGAATG ATAAAGCGGT AGACTTAGCG AAACGTTTTG TTAATAACTT TGATAAGTTT
ACAGATACTG ATAACGGTAA AGCGCTTGTT GCTGCTGGTC CTCAGTTATA A
|
|---|
| Protein sequence | MTAPKNSIDL SQYGIDDVNE VVYNPSYELL FSEETKAGLE GFDKGIVTEL GAVNVDTGIF
TGRSPKDKYI VRDDVTRDTV WWSDQGKNDN KAMTPETWDH LKGLVTTQLS GQRLFVVDTF
CGADEATRLK VRFITQVAWQ AHFVKNMFIR PTDAELENYE PDFVVMNGAK TVNDKWEEQG
LNSENFVAFN LTEKIQLIGG TWYGGEMKKG MFSMMNYYLP LQGIASMHCS ANVGEDGDTA
IFFGLSGTGK TTLSTDPKRQ LIGDDEHGWD DNGVFNFEGG CYAKTINLSK ENEPDIYNAI
RRDALLENVT VDANGKIDFD DNSKTENTRV SYPIHHIDNI VKPVSRAGHA KKVIFLTADA
FGVLPPVAKL TPEQTEYYFL SGFTAKLAGT ERGITEPTPT FSSCFGAAFL SLHPTQYAEV
LHKRMDDAGA EAYLVNTGWN GTGKRISIKA TRAIIDAILD GSIDNAETET VPFFNLEVPK
VIAGVEGDIL DPRNTYEDPS VWNDKAVDLA KRFVNNFDKF TDTDNGKALV AAGPQL
|
|---|
| |