| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4569 |
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| Symbol | mshA |
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| ID | 3521851 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4822575 |
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| End bp | 4823138 |
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| Gene Length | 564 bp |
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| Protein Length | 187 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637287009 |
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| Product | MSHA pilin protein MshA |
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| Protein accession | YP_271217 |
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| Protein GI | 71281379 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.442923 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAAGTA GTATGAATGT AAAAGCAAAT CAAAAGGGTT TTACCTTAAT TGAATTGGTC
GTAGTAATTG TTATTTTGGG TATTTTAGCG GTAACAGCAG CACCAAGATT TATAGATGTT
CAAGATGATG CGCGTACAGC GACTTTAGAT GCAATAAAAG GCTCCATAGA AAGTGTAAAA
GCTTTAGTGC ATAGCAAATC ATTAATCGCA GGTAATGAGA CGGTTGGTGC TGCAGCTGCT
TCTGGTGGTG CTGCCGCTGT AACACCTGTA GTTGTAGTGA ATGGCGTAGA TGTAAATGTT
AGTTTTGGTT ACCCTCGTTC AAATACAGCA TCAGTGACTG AATGGGAGGT TAATTTACTT
GATATCGCAG TTGGTGCTGC ATCGCCTAAT GATGATGGTG AATTTGTTGT CTCATCAATT
TCAGATGTTA TCTATATAAC GCCAGATCCA GATGGGACAA ATACAAAATT AACGGTAGTT
CCTACTACTT GCTTTGTGAT TTATACCGAA GCAGCATCTG CAGCGAATGC AGATATTCCA
GTTACAGCAG TAACGGATTG CTAA
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| Protein sequence | MKSSMNVKAN QKGFTLIELV VVIVILGILA VTAAPRFIDV QDDARTATLD AIKGSIESVK
ALVHSKSLIA GNETVGAAAA SGGAAAVTPV VVVNGVDVNV SFGYPRSNTA SVTEWEVNLL
DIAVGAASPN DDGEFVVSSI SDVIYITPDP DGTNTKLTVV PTTCFVIYTE AASAANADIP
VTAVTDC
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