| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4325 |
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| Symbol | |
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| ID | 3518740 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4550986 |
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| End bp | 4553289 |
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| Gene Length | 2304 bp |
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| Protein Length | 767 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637286766 |
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| Product | ABC transporter, ATP-binding/permease protein |
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| Protein accession | YP_270975 |
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| Protein GI | 71278640 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAGTA ATCATATCGC AGAACAGCAA ACTGTAGAAA ACGCATCCCC ACAAACTGCT
GCACCCGATG TAGTCGATGA ATTAACGTTA GAGCAGGCTT TATTACAACA AGCGCTGCCT
GTTAACGTGT TAAAAAATTT ATTGGATAAG TTAGAGACTT CGGTGCAAAC AGGTGCTTTA
GTTAACGCTT GTCAGCAGGC TGAAACGCAA TTGCCACAAG CGCCGGTGAT TAAACGACTG
TACTTTGTTT TCAATGCATT AAAATTAAAA GGCATACAAG CAGCCCAAGT CAGGTGGACG
CGTTTTGATC AACGTCGATT ACCGGCCATG CTTTTTACGC ACTCGGGCTG GATATTGGTT
GAACATGCAA AAGAGAATAA GTTATTAGTG ACGAATGAGG CAGGTGAGAG CGAGCATTGC
ACACACGAGC AACTCGAAAC GGGCATTGTC TTGTGGCTGC GCGTCGCAAA AAAAAGTGAG
CAAAGCTCCA TTTTTTCATT AAAGGGTAAT ATTGCCGCTA GACTTGTATT TAGTAAAATG
TTTAAAAATC GTCGTTGGTT AATCGATATT ATCGTTGCCA CGGTTATTAT TAATGTTTTG
GCGGTATCAA CGGCTATTTT TGCAATGCAA GTTTATGATC GAGTGGTTCC AACTTTAGCG
TATGCCACTT TAACTACCTT AGTCATGGGG ATGTTTATTG TCGTTGTACT GGATTGGTTT
TTAAAAACAA TCCGTGCACG TACCTTAGAC AGTGTGAGTT GTGCGGTAGA TAAAGCGGTA
TCACAACAAG TATTTGACCA TGTGATGCAT TTGCAGTTAG ATGAGCGCCC TCGTAGTTTG
GGTACACTGG CCGCGCAAGT GAGTGGTTTA GATTCGGTCA GGCAATTCTT TAGTTCAGGG
GTTGTTTTTG CTTTAGTAGA CCTACCTTTC GCCTTATTTT TTATTGGTAT GATTGCACTT
ATTGGCGGCC ATATTGGCTG GGTTTATCTG ATGTTATTAC CTATAGCACT AACTTTAGGC
TGGATGACAC AAAGACGATT ACGCCGATTA CTTAAACAGC AAATGATGCG CTCTAATGAA
CGTCAAGGGT TATTAGTTGA TGCTATTAAA GGCGCTGAAT CTATTCGGGC GAATAATGCA
ACATGGCGTT TTTCAGCACA ATGGCAAGAG ATAACGCAAA CTATTTCGAG CTATAATATA
CGCCAAAAAG CGATCAGTAA TTTTGCCACT GTTAGTACAG GCAGTTTATC TACTGCTGCT
TATATCAGTG CTATTGTTGT TGGTGTTGGC CAAATTGAAG CAGGTAATTT AACCATGGGG
GCCTTGATTG CTTGTAGTAT TTTAGGTGGC CGTGTTATTG CCCCTGTTGC ACAAAGTGTG
CAGTATTTTT CGCAGTGGCA AAATGTTGCG CAAGCATTAG AAATGGTGAA TCAGGTATTA
TTATTGAACA CGGAGCGCCG CGTAGATCAA AATTTATTAT TACCTGATGA GTTACCTAAA
AAAATCAGTT TAGACGGGAT AATGTTTTCC TATCCTGAAT CACCTATACG GCAATTAAAT
ATTAATAAAT TAACCTTTAC TGCGGGTGAT CGTGTTGTAT TGCTCGGCGC GATAGGATCA
GGTAAATCGA CCTTACTTAA AGTGTTAGCA GGTTTATATA AACCTGCGGA AGGCAGAATT
AAATTGGGTC AGGCTGACTT ATGGGAAATA GAGCCCAATA TTGTCGCTGA TCAGGTCAGT
TACTTACCCC AAAGTGTGCA TTTATTTAAA GGAACTTTAC GTAGCAATTT AGCATTATCT
GGCGCGGTAA GTGACTCTCA CTTGTTACAG GTATCTGAGC AACTTGGTAT AGATAAAATT
GCTGCGGATG ATTCGTTAGG TATGGAATTA GCCATTAGTG AAGGTGGAGA AGGATTATCT
GGTGGTCAAC GTCAGCTGGT TGGTCTTGGT CGAACCTTTT TAGCACAACC TAAAATATGG
TTGTTGGATG AGCCTACAGC GACTTTAGAT AACGAATCGG AACAAAAAGT ATTACAGGCA
TTGCTAGACA ATGTTAAAAC CGATGATATT TTAATTATTT CAACTCATCG CCCTGCTTTA
GCGGCGAAGA TGGCGAATCG CGTTATTGTG ATGCAGCACG GTGAGATAAT CAATGATGGG
AAACCTGAGG ATGTTCTGTC CAAAATCATG TCTAATGTTA CGAAAAATAA AGCAACTGTC
TCAAGCAGAG ATGCTCCAAC ATTACGCACA CCAAAAGGTT TTGTCGCGGC TAATGTGAAT
CAAGGTGACA ATCATGTTAT TTGA
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| Protein sequence | MNSNHIAEQQ TVENASPQTA APDVVDELTL EQALLQQALP VNVLKNLLDK LETSVQTGAL
VNACQQAETQ LPQAPVIKRL YFVFNALKLK GIQAAQVRWT RFDQRRLPAM LFTHSGWILV
EHAKENKLLV TNEAGESEHC THEQLETGIV LWLRVAKKSE QSSIFSLKGN IAARLVFSKM
FKNRRWLIDI IVATVIINVL AVSTAIFAMQ VYDRVVPTLA YATLTTLVMG MFIVVVLDWF
LKTIRARTLD SVSCAVDKAV SQQVFDHVMH LQLDERPRSL GTLAAQVSGL DSVRQFFSSG
VVFALVDLPF ALFFIGMIAL IGGHIGWVYL MLLPIALTLG WMTQRRLRRL LKQQMMRSNE
RQGLLVDAIK GAESIRANNA TWRFSAQWQE ITQTISSYNI RQKAISNFAT VSTGSLSTAA
YISAIVVGVG QIEAGNLTMG ALIACSILGG RVIAPVAQSV QYFSQWQNVA QALEMVNQVL
LLNTERRVDQ NLLLPDELPK KISLDGIMFS YPESPIRQLN INKLTFTAGD RVVLLGAIGS
GKSTLLKVLA GLYKPAEGRI KLGQADLWEI EPNIVADQVS YLPQSVHLFK GTLRSNLALS
GAVSDSHLLQ VSEQLGIDKI AADDSLGMEL AISEGGEGLS GGQRQLVGLG RTFLAQPKIW
LLDEPTATLD NESEQKVLQA LLDNVKTDDI LIISTHRPAL AAKMANRVIV MQHGEIINDG
KPEDVLSKIM SNVTKNKATV SSRDAPTLRT PKGFVAANVN QGDNHVI
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