Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_3847 |
Symbol | |
ID | 3522418 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 4016256 |
End bp | 4017320 |
Gene Length | 1065 bp |
Protein Length | 354 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 637286293 |
Product | porin |
Protein accession | YP_270509 |
Protein GI | 71281946 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAATAACT TTAAAATCAA AAAATCATTA ATCGCTTTAG CACTTGTTTT ACCAGCCTTT GCTTCTTATG CAGAAACGTC TGAAGAAAAC TTGAAAAAAC AGCTTACTGA AATTCAAACG CGTTTAGCAC AATTAGAAGA GTCTAAAGAG CCAGCGGCTA CTTCAGACAA TACCTCTATT AATTTTTACG GTTCTTTACG TCCTACTTTT GGTCTAACAA GCACTGATTC TGCTGATAGC TGGGATGTTG GTGATGCATT ATCACGTATC GGTATCGCAG CAGAGCATAA ATTAAGCAAT GGTATGACTG GTTTTGCAAA AGGTGAGTTT AAAGTTCAAA TTCAAGGTGA TGCGAGTTTT GGCGATGCAC GTAAAGCATA TGTTGGTATA AAGGGTGATT TTGGTCGTGT TGCCATTGGT AAACAGGATA CAACTCAATA CGCAATCATT GGTGACCCAG TTGATATTTT CAACCGTGCA TCAACACCAC TTGCCTATGA TGACGCTAGC CCATTCCGTC AACAAGAAAT GGTTAGCTAC AGAAAGAACT TTGGTAACTT AGAATTTCGC ATTGAAGGTC AATTCAAAGG CGAAACAGAT ATTGAAGGTA GTGATTTAGT TAACGGTGGT TTTAAATATT CTGGTGATAG CTTTACTTTA GCTGCTGCTT ACCTAACTAG AGACATGCCT GGTACTGATG AAAACACAGT AGGTGTATCT GGTTCAAAAT CATTTGGTGA CTTATATATT GCCGCAGCTT ATCAAGACAT TGACCGTGGT GGTAATGGTC AAGATAGAAC GACTATTGAT TTAGTTGGTG CATACAAAAT TAATGAAATC TACAAAGTTA AAATGGGCTA TTCTATATTT TCAGACGATT TAGTACCTGT AGCTAGTAAA GAAATCACTC GCATCAATGC CACAGTAGAA TGGCACGGTA GCCCAGATTT CTACTTATTT GCTGAAGTTC AAAACAATAG CTATGATGAT GAAGTTGCAG GTAATAAAGA AGACAGCAAT CAATTTATCG TAGGTATGCG TTACAACTTC GATTATAGCT TTTAA
|
Protein sequence | MNNFKIKKSL IALALVLPAF ASYAETSEEN LKKQLTEIQT RLAQLEESKE PAATSDNTSI NFYGSLRPTF GLTSTDSADS WDVGDALSRI GIAAEHKLSN GMTGFAKGEF KVQIQGDASF GDARKAYVGI KGDFGRVAIG KQDTTQYAII GDPVDIFNRA STPLAYDDAS PFRQQEMVSY RKNFGNLEFR IEGQFKGETD IEGSDLVNGG FKYSGDSFTL AAAYLTRDMP GTDENTVGVS GSKSFGDLYI AAAYQDIDRG GNGQDRTTID LVGAYKINEI YKVKMGYSIF SDDLVPVASK EITRINATVE WHGSPDFYLF AEVQNNSYDD EVAGNKEDSN QFIVGMRYNF DYSF
|
| |