Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_1258 |
Symbol | |
ID | 3522631 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 1289047 |
End bp | 1290375 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637283722 |
Product | putative MFS transporter family protein |
Protein accession | YP_268001 |
Protein GI | 71282158 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3104] Dipeptide/tripeptide permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.63699 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTAATG TTGTTTCAGT AAAGCGCTTT AAAGCATTCC CACGATTAAT GTGGATCTTG TTATTTGGTT CATTTATCAC CCGTGGTAGT TACTACATGG TATGGCCATT TTTAGCGGTA ATCCTTTACG AAAAGTTTGC ATTATCTGCC ACACATGTAG GGCTCATTCT TTCAAGCGCT GCCGTTATTT CAGTGCTAGT GAGTTTCGTT GGTAGCGCGT TATCTGATCG AATTGGCCGT CATCAGTTAA TGTATGCCAG TGGTATTTTA TATATCATTT CTTTTTCGAT ATTAGCTGAG GTGGATTCCA TTGCCGGTTA TTCGCTGGTG ATCACCTTGT GTTCAATTGC TACTGCGCTC TGGCGGCCAC TCACCTCAGC ATTAATCGGC GATATCATCA AAGATAAAGG CACTCGCGAA CTAGCCATGC AGTCATTGTA TTTTGTCGTT AATGTCGGTT GTGCTGTCGG CCCAATGTTA GGGCTGTGGT TAGGTTTAAC AGGAGAGCAA TCAAGTTTTT ATATTACGGC GGCAGCATTT GCCTTTTTAT TGGTGCTTTT ATGGTGGGGC TTTCATCAAC ACAGTAAGTT AGAGAACGAA AAATCAGTGC AAGCTAATCA AAGGGCTGCC GATTCGCTGG ATAATAAAAA AAATAGCATC TCTACTGAGA CTCACAATCA AAATAAAACG CAGACTAACA TCACAACGAA AAATGGTGCA AGTAATCAAA TACTAAAGGT ATTAATGGCT GATAAGTTAT TACAATGTCT TATTTTTGCC AATATCTTAT GCATGTTTAT TTATGCACAA ATGGATAGCT CGCTTATACA ATATTTAACG CGAGCTAAAG TCCCTGATTT ATTACAGCTT ATTTCAGCGA TGATTTTTAC CAATGCGTTA GTGATCATTT CAACGCAATT TCTATTACTG AAGTTAATGG CAAGTTTATC TTTAATTAGC CGAATACAGG TCGGTCTAGT GTTATTGATG TGCTCACAAA TTTGGCTAGC GGTAAATCCA TTAACGCTTT TTTGGGGGTG GATTGGTGCG ATTGTAGTGA TGAGCTTAGC GGAAACTATT TTATTCCCAA CCATGAACGT GCATATTGAT CGTTTGGCCC CGGAGCATTT ACGTGGTGCT TATTTTGGTG CCGCCTCATT TTATGAATTT GGCTATGCTA TAGCGCCATT AGGTGGCGGT ATTATTCTCG ACCAACTGGG CGGTTCTTGG TTATTCTTTA TTGCTGCAGC GTTAACACTG ATTGTTATTT ATCTTTACAG TATGTTGGAT AATTTACCTC GACCTGACTT TGTAAAACTT GAAAATTAG
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Protein sequence | MSNVVSVKRF KAFPRLMWIL LFGSFITRGS YYMVWPFLAV ILYEKFALSA THVGLILSSA AVISVLVSFV GSALSDRIGR HQLMYASGIL YIISFSILAE VDSIAGYSLV ITLCSIATAL WRPLTSALIG DIIKDKGTRE LAMQSLYFVV NVGCAVGPML GLWLGLTGEQ SSFYITAAAF AFLLVLLWWG FHQHSKLENE KSVQANQRAA DSLDNKKNSI STETHNQNKT QTNITTKNGA SNQILKVLMA DKLLQCLIFA NILCMFIYAQ MDSSLIQYLT RAKVPDLLQL ISAMIFTNAL VIISTQFLLL KLMASLSLIS RIQVGLVLLM CSQIWLAVNP LTLFWGWIGA IVVMSLAETI LFPTMNVHID RLAPEHLRGA YFGAASFYEF GYAIAPLGGG IILDQLGGSW LFFIAAALTL IVIYLYSMLD NLPRPDFVKL EN
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