Gene CPS_0842 details

Gene Information

• Locus tag: CPS_0842
• ID: 3518788
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 857865
• End bp: 859814
• Gene Length: 1950 bp
• Protein Length: 649 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 637283307
• Product: putative surface protein
• Protein accession: YP_267591
• Protein GI: 71278610

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTATTTCA AAGCTTGGTT TATCCCCCTT ATTTTTATAT TGCTGACCTT AGCGGGTTGT 
AGTGATCATG CTGATCCACC ACCGCCGCCA CCGCCAGAGA GAGAACTTGT AAGTATTCAA 
TTAACGATTG ATAGCCAGGA ATTTCCTATT GGCATTACCC ACACGGCTAC CGCTATTGGT 
AACTACTCCG ATTATTCAAC TGAATCAGGC ATTGATTACA CCTGGAGCAC TGAAAGTGAG 
ACTGAAGGCG TTGCCACTGT TGACACCGCA GGTAATATTA CCGGCGAAAT TACAGGCAAT 
ACTAAGCTCA TCGTTACTGA GCAAGGTATA ACTAGTTCTT TAGATATTAC AATTAGTGCA 
GCCGTACCAC AAAGTATTGA AATTTTCCCT GGTAACACTT CTATAGCAGG CGGCCTTGAT 
GTTCAGTATC AGGCGATAGT GCTTTATAGT GATGGTGAAG AGTATGATAT AACTCGTAAT 
AATAATGCGA CCTGGATAGC TGAGAGTGCT CCTATCGCAG AGTTTTCTGG TAATGACGGC 
ATCGCACATA CCTCTGAACG CTATGAAGGT GGCACATATA TTGATGTGCA ATTTGAAGGA 
GTAACAGCAA ATACAAGAGC TGTGCTGAAG GTTTCATTTC CAACGGTAAC TCAATTAATT 
ATTACCCCCA TCGAGAGAGC TGCCGATACG ACAACGGCTG AAATTACAGT GCCTAGAGGT 
CAAACCATTG GTTTTTCAGC AACGGCTTAT TATTCTAATA ACACCTCTCA TGTTGTAACC 
GATGAAACAA TTTGGGGTAC AAAAGATGAA ACAGTCATAA AAGCAACAGA TAAGTCGGGT 
ACGTTTCATG GGGAAAAAGT AGGTAATACT GATATTACCG CTGCGTTTGA TGGTGTTGTC 
GGTGAAAGAG CTGTTGAGGT AAGCAGTGCT GAGTTTGAAT CAATTGTCGT TTCTTTAGCT 
AGCGACTCTT TTCCAGTCGG CCTTGTTAGA CAAGCCACTG CTAAGGCGGA GTTTGTTGGT 
GATGTGAGCT ATAACTTGAG TAACCAAAAA AATGGTTTCT GGCAAAGTTC AAATACTAAA 
GTTGCGACAG TCGACTTAAG TGGCATGGTC ACTATGCGAC ACCCAGGTGA GACTGAAATA 
TCATTTTTGT TTAATGAGGT GCTTACAACA ACGCCTCTTG AGGTGACTCT AGCCAGAGTT 
ACCGAAATTA ATATCTCCCC TCTAAATCCT TATTTTGTTG GTGAAGGGAA AAAAAGGCAA 
CTAACCGTGA TGGGAACATA TGATAACTTT GAAACACTTG AGATTACCCA TAACCCTAGA 
TTAAAATGGG AATATTATGC TTCTGATGGA GAGTTAGGGT TTATTTCTAA TGATGAAGGA 
GAGGTTGATC GAAAGGGAAT GCTGCATAAT TTCCCTACGG ATCAGCCACT ATCTATCTAT 
TTCACAATAA AAGCCACAAT GGACGGGACA CATAATCAAT CAGTCGCTAC ATTTGGCGCA 
ACCAATATTC TAACGAATGA GGCAGTAACG TTAAACTTTA TTGGGCCATT TACTGATATT 
GATGCTAAGA ACTTATTATC TTTCACTGAC TTCAGTGTGC TTTATCGTGA AAGTGGGGTT 
ACAGGGCCAG CCGACTCTAC CTTTATTATG GTAACGTTTA ATGAAGCGAG CCTTCTTTGT 
GATAGCTTGG TATATGACGA TTTTGATGAT TATAGATTGC CAACCGCAGC AGATTTACAA 
GCCGTTTGGG TGAAGTATGA TAAGACTGCC GATGAAGAAT ATGCATTGTA TAGCAATGAA 
AAGTGGGCTG TAGGGCAACA TTTTTGGACT ACCGACTCAG ACGACGAAGG GAATTACTCA 
TTGGTAGACT TACAGCGGGG CGTAACAGGT CTTTCTTCGA CAACGGACAT TAGACATTAT 
GCGAGCTGTG TTAGAGATAC TGCGCTGTAA 

 

Protein sequence

MYFKAWFIPL IFILLTLAGC SDHADPPPPP PPERELVSIQ LTIDSQEFPI GITHTATAIG 
NYSDYSTESG IDYTWSTESE TEGVATVDTA GNITGEITGN TKLIVTEQGI TSSLDITISA 
AVPQSIEIFP GNTSIAGGLD VQYQAIVLYS DGEEYDITRN NNATWIAESA PIAEFSGNDG 
IAHTSERYEG GTYIDVQFEG VTANTRAVLK VSFPTVTQLI ITPIERAADT TTAEITVPRG 
QTIGFSATAY YSNNTSHVVT DETIWGTKDE TVIKATDKSG TFHGEKVGNT DITAAFDGVV 
GERAVEVSSA EFESIVVSLA SDSFPVGLVR QATAKAEFVG DVSYNLSNQK NGFWQSSNTK 
VATVDLSGMV TMRHPGETEI SFLFNEVLTT TPLEVTLARV TEINISPLNP YFVGEGKKRQ 
LTVMGTYDNF ETLEITHNPR LKWEYYASDG ELGFISNDEG EVDRKGMLHN FPTDQPLSIY 
FTIKATMDGT HNQSVATFGA TNILTNEAVT LNFIGPFTDI DAKNLLSFTD FSVLYRESGV 
TGPADSTFIM VTFNEASLLC DSLVYDDFDD YRLPTAADLQ AVWVKYDKTA DEEYALYSNE 
KWAVGQHFWT TDSDDEGNYS LVDLQRGVTG LSSTTDIRHY ASCVRDTAL