Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_0467 |
Symbol | pilM |
ID | 3522504 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 469834 |
End bp | 470913 |
Gene Length | 1080 bp |
Protein Length | 359 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637282932 |
Product | type IV pilus biogenesis protein PilM |
Protein accession | YP_267225 |
Protein GI | 71282032 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4972] Tfp pilus assembly protein, ATPase PilM |
TIGRFAM ID | [TIGR01175] type IV pilus assembly protein PilM |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.183586 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTAGACA AACTATGGAA AAAGAAAAAC TCAATGATGG TTGGAATCGA TATTGGTTCT CATTCAGCGA AGGCTGTACT ATTGGGTCAG GGAAATGAAG GCTTTATAAT TGAAGATTTT GCCATTGAGC CAATGCCTCG AGGTTCGGTT GTTGATCGTG AGATTCAAGA TATCGAAGCT GTTGGTGCCG TTATAGCGAA ACTGAGGAAA AAGATTTCTG CAAAAGCCAC TGATGCAGCA GCTGCAGTAT CAGGGCAAAC TGTTATTACT AAATTGATTT ATATGGATGT AGCTTTGACA GAGGATGAAC TGGCAAGCCA AATTGAAATT GAAGCTGATA GCCTCATTCC ATTTCCCCTT GATGAAGTTA GTTTAGACTT TGAAACTCTT GATGTTAATG AATCGGACCC TAGCAAAGTA AATGTGTTGC TTAGTGCGGC TCGAACTGAA TCAATTGAAG CGCGTGTTGC AGCATTAGAT GCCGGAGACT TCCATGCCAA GGTCATTGAT GTTGAATCTT ATGCCGTTGG CCGAGCTTAT GATTTATGTT TAACACAACT TCCAGATGAC GCAAAAGATA AAGTTGTGGC AATTGTTGAT ATAGGATCAA CGGTCACACT GTTCTCAGCA ACTGATGCGG GTAAACATAT TTATAGTCGA GATCAAATGT TTGGAGGAGA ACAGTACACT CGTTCTATTG TCTCTTATTA CAATAAATCC TTTGAGCAGG CTGAAGAAGC AAAAACCTCT AACGACTTAC CACCAAACTA TACTTTTGAA GTCCTAGCAC CTTTTCATAC GGTGTTAATG CAGCAAATAC GTCGTGCAAT TCAGATGTTT TTAACGACCA GTGGTCAAAA CAAAGTCGAT TACTTATTGA TTTCTGGCGG TACAGCGGCA TTAGAAGGCA TTGAAAGCTT GCTTACAGAA GAATTAGGAA TACATACCGT TATTGCTAAT CCATTCAATG ATATGTCATG TGGTGAATCT ATTGAGCAAG CTGAGCTTGC TAATGTTGCA CCTCAATTAA TGGTGGCAAC AGGTTTAGCC TTAAGGAGTT TTACCCCATG GCACATATAA
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Protein sequence | MLDKLWKKKN SMMVGIDIGS HSAKAVLLGQ GNEGFIIEDF AIEPMPRGSV VDREIQDIEA VGAVIAKLRK KISAKATDAA AAVSGQTVIT KLIYMDVALT EDELASQIEI EADSLIPFPL DEVSLDFETL DVNESDPSKV NVLLSAARTE SIEARVAALD AGDFHAKVID VESYAVGRAY DLCLTQLPDD AKDKVVAIVD IGSTVTLFSA TDAGKHIYSR DQMFGGEQYT RSIVSYYNKS FEQAEEAKTS NDLPPNYTFE VLAPFHTVLM QQIRRAIQMF LTTSGQNKVD YLLISGGTAA LEGIESLLTE ELGIHTVIAN PFNDMSCGES IEQAELANVA PQLMVATGLA LRSFTPWHI
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