| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0274 |
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| Symbol | |
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| ID | 3521816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 277531 |
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| End bp | 278955 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637282740 |
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| Product | sigma-54 dependent transcriptional regulator/sensory box protein |
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| Protein accession | YP_267041 |
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| Protein GI | 71281344 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGCAA ATATAAAAGA ATTTTTAGCT GACTCACAAC TACTGCTCAA TGCCGTCGGC
GAAGGTGTCT ATGGCTTTGA TAAAGAAGGC AATGCTGTGT TTGTAAATCC AGCCTCAGAG
CAAATGACAG GTTGGAAGTC TGAAGAGTTA CTCGGTAAAA ATATTCATAA ATATCATCAT
CATACCTATG CCAATGGTGA AGTATATCCA AGTGAAGAGT GCAGTATTTA TAATACCATG
CGTGACGGTG TAGAGCGTAA AATTACCGAT GAAGTATTTT GGCGCAAAGA TGGTACAAGC
TTTCCTGTAG AATATACCTC AACCCCCGTT TATAAAGACG GTGAACTCAT CGGTGCGGTT
GCTGTTTTCC GTGATGTTAG CCAACAAAGA CTCGCCGATA GCAACTTACG AGCTGCTTTG
AAAAAAGTAC AAGACCTCAC TGAAAAACTA CAGGCGGAAA ACAGCTATTT GCAAGAAGAA
ATAAATGAAA ACTGGCATGG TTCGGGATTA GAAGGTAACA GCCCAAAGTT TCTTGCCATG
TTACAGCAAA TAAAACTGGT CGCTCAAACA GATAGCACCG TACTCATATT AGGTGAAAAT
GGTACAGGTA AAGAACTAGT CGCACGTAAT TTACATCAAT TGAGTCAACG CCATAATACT
CCCTTAGTAA AAGTAAACTG TGCTGCATTT TCGTCAAACT TGTTAGAGTC GGAGCTTTTC
GGACACGAAA AAGGTGCATT TACGGGCGCA AGTGAAAAAA GGCGAGGCCG CTTTGAGCTC
GCCGACAAAG GCACCTTATT TTTAGATGAA ATTGGTGAGC TCTCCCCTGA TGCGCAGAGT
AAGTTATTAC GTGTTTTACA GGAGCGTGAA TTTGAGCGTG TTGGTGGCAG TAAAACTATC
AAGGTTGATA TTCGTATTAT TGCCGCTACC AACCAAGATT TACTTGCCAT GGTTGAGCAA
GGTAAGTTCA GAATGGACTT ATATTACCGC TTGAATGTAT TCCCTATCGT TATGCCCGCG
TTAAGAGAAC GAATAGAAGA TATTCCCTTA CTTTGTCACA GCATTTTAGC GCAACTTAAT
ACTAAACTTA ATAAAGATAT CAAAAGCATA AGTAAACATA GTTTAAACAA ATTGGCGAGT
TATCATTGGC CAGGGAATAT TAGAGAGTTA CAAAACATTC TTGAGCGTGA GGTTATTCTA
TCCACTTCGA CAACGCTTCA AATTCAACAA AAGTTTGATA AATCTCAATC GGTTGTACGT
ACCTTTAACA AACCTTTGGC TGACATTGAA AAAGCTTACA TCATTGAGGT ATTAAATGAC
TGTCACTGGC GGATTGGCGG TAAAAATGGC GCAGCCAAAA TACTAGGTTT ACCCGATAGT
ACCTTACGTT CAAGGATGAT AAAGCTTAAA ATCAAGCGCG GTTAA
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| Protein sequence | MPANIKEFLA DSQLLLNAVG EGVYGFDKEG NAVFVNPASE QMTGWKSEEL LGKNIHKYHH
HTYANGEVYP SEECSIYNTM RDGVERKITD EVFWRKDGTS FPVEYTSTPV YKDGELIGAV
AVFRDVSQQR LADSNLRAAL KKVQDLTEKL QAENSYLQEE INENWHGSGL EGNSPKFLAM
LQQIKLVAQT DSTVLILGEN GTGKELVARN LHQLSQRHNT PLVKVNCAAF SSNLLESELF
GHEKGAFTGA SEKRRGRFEL ADKGTLFLDE IGELSPDAQS KLLRVLQERE FERVGGSKTI
KVDIRIIAAT NQDLLAMVEQ GKFRMDLYYR LNVFPIVMPA LRERIEDIPL LCHSILAQLN
TKLNKDIKSI SKHSLNKLAS YHWPGNIREL QNILEREVIL STSTTLQIQQ KFDKSQSVVR
TFNKPLADIE KAYIIEVLND CHWRIGGKNG AAKILGLPDS TLRSRMIKLK IKRG
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