| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0149 |
|---|
| Symbol | |
|---|
| ID | 3520968 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 158416 |
|---|
| End bp | 159726 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637282616 |
|---|
| Product | leucine-rich repeat-containing protein |
|---|
| Protein accession | YP_266917 |
|---|
| Protein GI | 71280502 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTACACTA GCGCCGTTTT TAATCATATC TACGGACGCT TTATGTTGCA TACGCTTTCT
CAACTTCGCT CTGGCGAACT CGCCGGCATT AGCCAATTAA AATTATCTGA AAATCTAAAC
ACATTCCCAT TAGAAATTTT AACGTTAGCA GACAGCTTAG AAATCCTAGA TTTATCTAAT
AATGCCTTAT CATCACTACC TGATGAGTTA GCACAATTGA CAAAATTAAA GATTATTTTC
GCTTCACAGA ATCAATTTGA ACACTTGCCA GAAGTCTTAG GACAGTTACC AAACCTTGAG
ATGGTTGGCT TTAAATCGAA CCAAATAAAA CAAGTGGCGG AGCATTCATT ACCTGCTCAA
TTACGTTGGT TAATTTTAAC GGATAACTTA ATTGAAACAT TACCAAATAG TTTAGGTGAG
CGACCAAGGT TACAAAAATT AGCCTTGGCG GGTAACCAAT TAACGCATTT ACCGCAAACA
TTAGCGCAAG CCCATAATTT GGAACTCGTA CGTATTTCTG CAAATAAACT AACAGAATGC
CCTGAACAAT TATTGAACCT GCCGAATTTG GCCTGGTTTG CCTTTGCTGG TAACCCTTTT
ACCGCAGTTG AGCCTACAAC TCACAGTGAG TCTTACACCA AAGTTAAGTC CGTTCCTGAA
CTATCATCAA CAAGCTACAC CTTAGAAAAT GTATTAGGTC AGGGTGCCTC GGGTGTTATT
TCAAAGGCAC ACTGGAATAG CCCGCAATCA CAATTTCCTG AAGATATTGC AGTAAAAGTA
TTTAAAGGTG AAATTACCAG TGATGGTTAC CCACAAGATG AATTACAAGC TTGTTTGCAA
GTAGGCTATC ACCCAAATTT AGTAGAATCA TTAGCGCAAG TGAATGAAGA CAACTATCTT
GCGTTAATCA TGACGCTGAT CCCTGAAAAT TATCAAAACC TAGGTTTACC TCCTTGCTTT
AACAGCTGCA CCCGAGATAC CTTTTCACAG GGTTTCAGGT TACCTATTAC GCTTATTAGT
AACATTGTTA GTCAGATGCA AGATGTATTC GCACACTTGC ATAAAAATCA AGTATGTCAT
GGTGATTTAT ACGCGCATAA CACTTTATTT GATAGCCAAG GTAATATCAT TTTCGGCGAT
TTTGGTGCTG CCACTAGCTA TCAAATGCTA ACGCCTGCAC AACAAGAGAA AGTTAAAAAT
ATTGAGAGCA AGGCGTTAAA CCATTTTATC GATGACTTAC TGAGTATTTG TGCTGAGCAA
GATAAAACAA CTAAAGCATT CGACACGCTA AAAGCGCATA TAAGTGCTTA A
|
|---|
| Protein sequence | MYTSAVFNHI YGRFMLHTLS QLRSGELAGI SQLKLSENLN TFPLEILTLA DSLEILDLSN
NALSSLPDEL AQLTKLKIIF ASQNQFEHLP EVLGQLPNLE MVGFKSNQIK QVAEHSLPAQ
LRWLILTDNL IETLPNSLGE RPRLQKLALA GNQLTHLPQT LAQAHNLELV RISANKLTEC
PEQLLNLPNL AWFAFAGNPF TAVEPTTHSE SYTKVKSVPE LSSTSYTLEN VLGQGASGVI
SKAHWNSPQS QFPEDIAVKV FKGEITSDGY PQDELQACLQ VGYHPNLVES LAQVNEDNYL
ALIMTLIPEN YQNLGLPPCF NSCTRDTFSQ GFRLPITLIS NIVSQMQDVF AHLHKNQVCH
GDLYAHNTLF DSQGNIIFGD FGAATSYQML TPAQQEKVKN IESKALNHFI DDLLSICAEQ
DKTTKAFDTL KAHISA
|
|---|
| |