Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_1814 |
Symbol | dapF |
ID | 4204553 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | - |
Start bp | 2005370 |
End bp | 2006188 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 31% |
IMG OID | 642566364 |
Product | diaminopimelate epimerase |
Protein accession | YP_699129 |
Protein GI | 110803272 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGTTTT CAAAAATGCA TGGAAATGGA AATGATTTTA TAGTTATAGA AGATTTAAAC AATGAGTATT TAGGTAAAGA GGGAGAAATT GCTCAAAAAA TGTGCCATAG AAGATTTGGA ATTGGTGCAG ATGGGATTTT AATAGTTAGA AAGAATGAAA ATTGTGATAT AGAAATGGTA ATAATAAATT CAGATGGATC TTATGCTGCT ATGTGCGGAA ATGGAATAAG ATGTTTTGCT AAGTATGTCT ACGAGAAGGG AATAGTAAAG AAAGATGTGC TAGATGTTTT AACAGGTGAT GGAGTTAAAA GAATCTTTTT AGAAATTGAG AATGATAAGG TAAAAACTAT CAATGTAAAT ATGGGATTTG GAGACTTTAA ACCAAAGAAT ATTCCAGCAT TATGTGATGA AGAAATAATA GAAAAAAAAG TAAGTGTAGG AAATGGAAAT TTTGAAATAA CATCTTTACT TATGGGTGTT CCTCATACTA TTATATTTGA GGAGGAAAAA TATCCTATAG AATGTGGTAA GGATATAGAA AAGTACGAGT TATTTCCTCA AGGAACAAAT GTTAATTTCT GCAAAGTAAT TGATAGAAAT ACAATGGAAG TTAGAACCTG GGAAAGAGGT GCAGGTCCAA CCTTAGCATG TGGAACAGGA AATTGTGCTT CAGTTATAGC TGCTAATAAA TTAGGTCTTG TAGATAAAGA AGTAAAGGTA ATAGTTCCTG GTGGAGAATT AAAAGTTAAT ATTGAAGATG ATGGAGTAAA AATGATAGGT AATGCGTCAT TTATTTGTGA TGGCACATAT TTATTTTAG
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Protein sequence | MKFSKMHGNG NDFIVIEDLN NEYLGKEGEI AQKMCHRRFG IGADGILIVR KNENCDIEMV IINSDGSYAA MCGNGIRCFA KYVYEKGIVK KDVLDVLTGD GVKRIFLEIE NDKVKTINVN MGFGDFKPKN IPALCDEEII EKKVSVGNGN FEITSLLMGV PHTIIFEEEK YPIECGKDIE KYELFPQGTN VNFCKVIDRN TMEVRTWERG AGPTLACGTG NCASVIAANK LGLVDKEVKV IVPGGELKVN IEDDGVKMIG NASFICDGTY LF
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