Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_1812 |
Symbol | |
ID | 4206542 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | - |
Start bp | 2002833 |
End bp | 2004221 |
Gene Length | 1389 bp |
Protein Length | 462 aa |
Translation table | 11 |
GC content | 28% |
IMG OID | 642566362 |
Product | pilus biogenesis protein, putative |
Protein accession | YP_699127 |
Protein GI | 110801793 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.956983 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAATATA CCATTAAAGA TATAGATATG AAGCTAATGG AGAATATATC TAAGAATACA GCTTTAGAGA TGAACTTAAT TGCCTTAAAA GAAAGTTCAG GTAAGATATT TTTTTATACA AGCAAGGAAG AATCGAAGAA AAGGGAGTAT TTATCCTTAT TATTTAGAGA AAAAGAAATA AACTTTGTAA TTGGAAATAA GGCTGAAATA GAAATTTTAA TTGAAGATTG TTATGGTGGA AAAAGTTTTT CTAAGGATAA ATTTATTGAG GAAGAATTAA TAAGCCTTAT ATCTTTAGGT ATAGAAAAAA ATACTAGTGA TATTCATATT GAACCCTTAG AAGAATATGC TAACATTCGC TTTAGAATAG ATGGAACTTT AGTTTTAGTT AAGAGAATAA AGAAAAATCT TTATGAAAAT TTAGTAAATA AGATAAAGTT AAAAGCTGAT ATGGATATAA GCGATAAATT AAGATGCCAA GATGGGAAGG TGTCATTTAA AAATTATGGG TATGATTGTG ACTTAAGAAT ATCAAGTATT CCAAGTACTT TTGGTGAAAA GTTAGTAGTT AGAATTTTAT ATAAGAAAAA TGAGCTTATG AATATTGATA ATTTGAGTTT AATTGAAGAA CAAAAGAATA AAATAAATAA ACTTTTAAAA TTAAAACACG GAATGGTGGT TATAAATGGT CCTACAGGAA GTGGAAAATC AACAACTCTA TATGCATTAT TAAATTCAAT AGACAAGGAA GGGATAAATA TAAGCACCAT AGAAGATCCT GTTGAGTTTA CCATAGAAGG AATAACACAA ACAAATGTTA ATGATAAGGT TGGATTAACC TTTGCTAATG GATTAAAGCA TATATTAAGA CAGGACCCTG ATGTTATATT AATTGGAGAA ATAAGAGATG AGGAAACGGC TAAAATTGCC ATAAGAGCTT CTATAACAGG GCATAAAGTA TATTCAACAA TACACGCTAA CAGTGGTAAT GAAGTTTTTA ACAGATTATT AGATATGGGA GTAGAAGGAT ATTTAGTAAA GGAAGGAGTA AGTTCAATAA TAACTCAAAG ATTAGTAAGA AAAATTTGTG AAAAGTGTAA AGTGAAAATA GAGCTTAAAA ATGAACTAGT TGAGAAATTA AAAGAGGAAG AGTTAAGTTT AAAAGCTTAC TATAAAGGAA CTGGATGTGA AATGTGTAAT TGGACAGGTA ATAATGGAAG AAAAGCAATT TGTGAAATTA TATTTCCAAG AGAATATAAA AGCACAGAGG ATATTACATG GGGAGAAGAA CTATTAAAGG CATGCTTTAC CTTAGTTAAA AATGGAGAAA TATCTTTAGA AGAATATTAC TTATTAAAAG AATGTGAGGG GTTAGATGTT TGGTTTTAA
|
Protein sequence | MKYTIKDIDM KLMENISKNT ALEMNLIALK ESSGKIFFYT SKEESKKREY LSLLFREKEI NFVIGNKAEI EILIEDCYGG KSFSKDKFIE EELISLISLG IEKNTSDIHI EPLEEYANIR FRIDGTLVLV KRIKKNLYEN LVNKIKLKAD MDISDKLRCQ DGKVSFKNYG YDCDLRISSI PSTFGEKLVV RILYKKNELM NIDNLSLIEE QKNKINKLLK LKHGMVVING PTGSGKSTTL YALLNSIDKE GINISTIEDP VEFTIEGITQ TNVNDKVGLT FANGLKHILR QDPDVILIGE IRDEETAKIA IRASITGHKV YSTIHANSGN EVFNRLLDMG VEGYLVKEGV SSIITQRLVR KICEKCKVKI ELKNELVEKL KEEELSLKAY YKGTGCEMCN WTGNNGRKAI CEIIFPREYK STEDITWGEE LLKACFTLVK NGEISLEEYY LLKECEGLDV WF
|
| |