| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1619 |
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| Symbol | spoVB |
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| ID | 4204680 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | + |
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| Start bp | 1810394 |
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| End bp | 1811923 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 27% |
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| IMG OID | 642566170 |
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| Product | stage V sporulation protein B |
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| Protein accession | YP_698935 |
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| Protein GI | 110802332 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR02900] stage V sporulation protein B |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00148254 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGTAAAA ATGATTTCTA TAAAAACTCT TTCATGCTAA CAGCCTCTAA CTTAACAACT
GGATTATTAG GTTTTATCTT TTCTATGTAT CTATCAAAGG TACTAGGCCC TGAAGGAATG
GGGCTTTATG GTATTATAAT GCCTATTTAT AATTTATTTA TATCAATTAT GACAGCTGGT
ATAATTGCAT CCATTTCTAA GATAACTGCT ATATATTCAG CAAGAGATGA TTATAAAAAC
ATAATTCGAA CAATGAAAGT TGTGGCTATT TTTAATTTTA TTTGGTGTCT TATAATAGGA
ATATTTGTAT TTTTCTTATC ACCTATAATC GGACATTTTT GGGCTAAGGA TCCTAGAATA
ATAAAATCTA TAATGATAAC TTGTCCAGCT ATGATATTTA TAGCACTTTC AAACATATTA
AAGGGATTTT TCTATGGAAC TTCAAAAATC ACTGTTCCTT CTTTTATAGA TATTTTAGAA
AAATCTTTAC GTATCTTTGT TTTAGCTATA TTAATTTTTA TATTTAAAGC TGAAACTTTA
GAGTCTTTAG TTACCTTAGC TTACTTAGCC TTATGTCTTG GGGAACTACA AAGTTTAATA
CTTTTATTTG GATATTTTAA ATACTCAATG AGTAAATTTC CAAAAACAAA TGCAAAAGGT
GAAAGCCGTG CTCAATTATT ATTTGATGTT TTAGTAACCT CAGTACCTTT ATGCTTAAAT
GGATTTTTAA TGAGTATTTT TAGCGTTATA TCAACACTTT TAGTTCCTAA ACGGCTTATA
GTTGCAGGAT TTACTTATTC CCAAGCACTT TCTCTTATAG GAAAATATTC TTCCATGGCA
ATGTCCATAG TAACTTTTCC TATAATTATA GTTTCTTCAA TAAATACTAT GCTAATACCT
GATTTATCTC AAACTTTAAG TAAAGGGAAT TATCTTTCAG CTACTAAAAG AATTAGAGAT
GTTATTAAAA TAGCTTTTTT AATAGGTATT TGTACCACAG TAATTGGACT ATGTGTTCCT
GACTCTTTAG GTAAATTATT CTTTGGAAGA GATGATTTAG GACAATATAT AAGAATAACA
TCAGTAATGA TGCCAATAGT ATTTACTTCA AATACTATGT ATGGAATTTT AAATGGACTT
GGAAGACAAA ATGTAATTTT AAGAAATACT ATAATAACAG AAGTTTTAGA AGTTACATTG
TTATTTTTCT TAACTGCAAT ACCATCTATA AATATTTATG GTTATGCAAT AACTATGCTT
ATAATTTCAT CACTTTCACT TTGTTTAAAT CTTTATGAAA TATATAAAAA TATAAATATA
GGTTTATCCT TATCAAACTT CTTAATATAT ATATTAACAG GAGTTTTAAC CTATATATGC
TTAAGTCCAC TTTCACTAAA GCTTTCTTTT ATTGATTTTA GAGTTCAAGT TTTAGCTGTA
ACTTCTATAG CAGCTTCTAT ATTCATATTT TTAATAATAA AGGAGAAATT CTCATCGAGG
TTTAAAAAAA TCTCTTTAAA AAGCAGATAA
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| Protein sequence | MSKNDFYKNS FMLTASNLTT GLLGFIFSMY LSKVLGPEGM GLYGIIMPIY NLFISIMTAG
IIASISKITA IYSARDDYKN IIRTMKVVAI FNFIWCLIIG IFVFFLSPII GHFWAKDPRI
IKSIMITCPA MIFIALSNIL KGFFYGTSKI TVPSFIDILE KSLRIFVLAI LIFIFKAETL
ESLVTLAYLA LCLGELQSLI LLFGYFKYSM SKFPKTNAKG ESRAQLLFDV LVTSVPLCLN
GFLMSIFSVI STLLVPKRLI VAGFTYSQAL SLIGKYSSMA MSIVTFPIII VSSINTMLIP
DLSQTLSKGN YLSATKRIRD VIKIAFLIGI CTTVIGLCVP DSLGKLFFGR DDLGQYIRIT
SVMMPIVFTS NTMYGILNGL GRQNVILRNT IITEVLEVTL LFFLTAIPSI NIYGYAITML
IISSLSLCLN LYEIYKNINI GLSLSNFLIY ILTGVLTYIC LSPLSLKLSF IDFRVQVLAV
TSIAASIFIF LIIKEKFSSR FKKISLKSR
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