| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1489 |
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| Symbol | topB |
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| ID | 4205036 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 1665679 |
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| End bp | 1667874 |
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| Gene Length | 2196 bp |
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| Protein Length | 731 aa |
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| Translation table | 11 |
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| GC content | 30% |
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| IMG OID | 642566043 |
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| Product | DNA topoisomerase III |
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| Protein accession | YP_698808 |
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| Protein GI | 110803227 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTTTAT TGAAGAAATT AGTACTAGCA GAAAAACCTA GTGTAGGTAG AGAAATTGCC
AAGGTTTTAA AATGCAATAA TAATAAAGGA AGTTATATTG AAGGAAAGGA TTATGTAATA
ACTTGGGCTT TAGGCCATTT AGTAGAATTA CAATCTCCAG AAGATTATGA TAACAAGCTT
AAAACATGGT CTATGGAAAC TCTTCCAATG CTTCCTAAGC ATATGAAACT TAAGGTTATT
AAAAAAGCCA CTAAGCAATT TTATGAAGTT AAAAAGCAAA TGGAAAGAAA AGATATAGAT
GAAATAATAA TAGCCACAGA TGCTGGAAGA GAAGGAGAAC TTGTAGCACG TTGGATAATA
GAAAAAGCCC ATGTTAAAAA GCCTATAAAG AGACTTTGGA TATCCTCTCA AACAGATAAA
GCTATCTTAG ATGGATTTAA AAATCTTAAA CCAGGAGAAA ATTACAATAA TTTATATAAG
GCTGCTCAGT GTAGAGCTGA GGCTGACTGG TTAGTTGGTT TAAATGTTAC TAGGGCCTTA
ACTTGTAAAT ATAATGCTCA GCTTTCAGCA GGAAGGGTTC AATCACCTAC CTTAGCAATG
ATAGTTCAAA GAGAAGAGGA TATTAAAAAC TTTAAACCAA AAGAGTATAG TACTATTTTA
ATAGAAACAG ATAAATGTAA TTTTACATGG ATAAATAAGG ATAATAATTC AAGAATATTT
AAAAATGATT TTAAAGAAAA AGTTGTTTCT AATTTAAATG AGAAGAAAAG TGGAAAAATA
ATCAATATAA ATGAAAGTAA TAAAAAGAAA TTTTCTCCTC AATTATATGA TTTAACTGAG
CTTCAAAGAG ATTGTAATAA AATTTTTGGA TATTCAGCAA AACAGACCCT TAATATAATG
CAAAGGTTAT ATGAAAACCA CAAACTTCTT ACATATCCAA GAACTGATTC AAGATATATT
TCAAAGGACA TAGTTTCTAC TATTCCAGAT AGATTAAAAG CTGTAGCTAC GGGAGAATTT
AGAACTATAG CAAATGATTT ATTAAAAAAT CCTATAAAAG CAAACAAAAG TTTTGTAGAT
GATAATAAGG TTTCTGATCA CCATGCTATA ATTCCAACGG AGGAAAAAGG AAACCTAGCT
AATTTAAGTT CTGATGAGAG AAGAGTTTAT GAGCTTGTAG TTAAGAGATT TTTAAGTGTA
TTAATGCCTC CATTTGAATA TATTCAAACA ACTTTAACTG GTGAAGTTAA TGGAGAAAAA
TTAATTGCAA AGGGAAAAGT AGTTAAAGCT AAAGGATGGA AGAAGCTTTA TGATAGAGAA
GTTGATGATG AGGGAGAAGA GGATATAAAA GAACAAGAAC TTCCTAAATT AAAAGAGGGC
GATGAATTTA AAGTTCTTAA GGTTAATGTT AAAAAAGGAG AAACAAAGCC ACCAGCAAGA
TTTAATGAGG GAACTTTATT ATCTGCTATG GAAAATCCTC AAAAATTTAT ATCAGTAGAT
AAATCTTCAG CAAAGACTTT AGGAGAAACT GGAGGACTTG GTACTGTTGC AACTAGAGCG
GATATTATAG AAAAATTATT TAATTCCTTT GTAATAGAAA AGAGAGGAAA GGAAATAATT
CCAACATCTA AGGGAAAACA ACTTATAGAT TTAGTACCAA AGGATTTAAA GTCACCACTT
TTAACAGCTA ATTGGGAAGA GATGTTAGAG AGAATAAGTA AAGGAAAAGG CGATTCTAAG
AAATTTATAA AAGATATAAG AAACTATACC GTTGCTTTAG TTGAGGATGT TAAGCTTGGA
GAAAGCAAAT TCCATCATGA TAACTTAACA GGGAAAAAAT GCCCTCAGTG TGGTAAGTAT
ATGCTTGAGG TAAAAGGTAA AAATGGAACA ATGAATGTTT GCCAAGATAG AGAGTGTGGA
TATAGAGAAA ATATATCTAG AATAACTAAT GCTAGATGCC CTGAGTGTAA GAAAAAACTA
GAGCTTAGGG GACATGGAGA AGGTAAAATA TATGTTTGCC CGGGAGCAAA TTGTAATTTT
AGAGAAAAAG AATCTCAATT TAAGAAGAGA TTTGAGAAAA ATAACAAAAC AAATAAAAGA
GAAGTAAATA AAATAATGCA AAAGATGAAA AAAGAAGCAA ATGAAGATTT AAATAATCCT
TTTGCTGATC TTTTAAGTGG TCTTAAATTT GACTAA
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| Protein sequence | MILLKKLVLA EKPSVGREIA KVLKCNNNKG SYIEGKDYVI TWALGHLVEL QSPEDYDNKL
KTWSMETLPM LPKHMKLKVI KKATKQFYEV KKQMERKDID EIIIATDAGR EGELVARWII
EKAHVKKPIK RLWISSQTDK AILDGFKNLK PGENYNNLYK AAQCRAEADW LVGLNVTRAL
TCKYNAQLSA GRVQSPTLAM IVQREEDIKN FKPKEYSTIL IETDKCNFTW INKDNNSRIF
KNDFKEKVVS NLNEKKSGKI ININESNKKK FSPQLYDLTE LQRDCNKIFG YSAKQTLNIM
QRLYENHKLL TYPRTDSRYI SKDIVSTIPD RLKAVATGEF RTIANDLLKN PIKANKSFVD
DNKVSDHHAI IPTEEKGNLA NLSSDERRVY ELVVKRFLSV LMPPFEYIQT TLTGEVNGEK
LIAKGKVVKA KGWKKLYDRE VDDEGEEDIK EQELPKLKEG DEFKVLKVNV KKGETKPPAR
FNEGTLLSAM ENPQKFISVD KSSAKTLGET GGLGTVATRA DIIEKLFNSF VIEKRGKEII
PTSKGKQLID LVPKDLKSPL LTANWEEMLE RISKGKGDSK KFIKDIRNYT VALVEDVKLG
ESKFHHDNLT GKKCPQCGKY MLEVKGKNGT MNVCQDRECG YRENISRITN ARCPECKKKL
ELRGHGEGKI YVCPGANCNF REKESQFKKR FEKNNKTNKR EVNKIMQKMK KEANEDLNNP
FADLLSGLKF D
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