Gene CPR_1436 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPR_1436 
Symbol 
ID4204608 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens SM101 
KingdomBacteria 
Replicon accessionNC_008262 
Strand- 
Start bp1616428 
End bp1617057 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content29% 
IMG OID642565990 
ProductRNAse H family protein 
Protein accessionYP_698755 
Protein GI110802358 
COG category[R] General function prediction only 
COG ID[COG3341] Predicted double-stranded RNA/RNA-DNA hybrid binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTAAAA AATATTATGC TATAGCAAAA GGAAAATCAG GAATTCCTAA AATTGTTGGG 
ACTTGGCCAG AATGCCAAAA AGAAGTAATA GGATGTAAAG GCGCTAAGTA CAAAAGTTTC 
ACTTCAAAGG ACGAGGCAGA AAAGTTTATT TCTATTCATG AAAATGGAGG AAGCTTTGAG 
GAAGTTAAAG GAAATGAAGA GGTTAAGGAT GATTTAATTT ATATTTACGT AGATGGTAGC 
TTTATGGTTT CTAAAGGAAA TTATTCTTAT GGCTTTTTAG TAGTAAAAAA TGATGAGATA 
TTATATGAAG ATAATGGTAT TGGATATGAT AAAGAAGCAA TAGCTCTAAG AAACGTATCA 
GGAGAAGTTG AAGGAGCTAT GAAAGCAATT GAATATGCCA TAGAAAATGG ATATAAAGAT 
ATAGTTCTTT GTTATGATTA TCAAGGAATT GAAAGCTGGG CTTTAGGAAC TTGGAAAAGA 
AATAATAGAA TAACTCAAAA TTATAATGAG TTTATGCAAG AAAAATTTAA ACTCATAAAG 
GTTAGATTTA AAAAAATAAA AGGACATAGT GGAAATAAAT TTAATGATAG AGCAGATATA 
CTTGCCAAAA AAGCATTAGA AAGTCTTTAA
 
Protein sequence
MAKKYYAIAK GKSGIPKIVG TWPECQKEVI GCKGAKYKSF TSKDEAEKFI SIHENGGSFE 
EVKGNEEVKD DLIYIYVDGS FMVSKGNYSY GFLVVKNDEI LYEDNGIGYD KEAIALRNVS 
GEVEGAMKAI EYAIENGYKD IVLCYDYQGI ESWALGTWKR NNRITQNYNE FMQEKFKLIK 
VRFKKIKGHS GNKFNDRADI LAKKALESL