Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_1316 |
Symbol | |
ID | 4206486 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | - |
Start bp | 1486037 |
End bp | 1488400 |
Gene Length | 2364 bp |
Protein Length | 787 aa |
Translation table | 11 |
GC content | 23% |
IMG OID | 642565870 |
Product | sensory box histidine kinase |
Protein accession | YP_698636 |
Protein GI | 110803461 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5002] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00351204 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTAATTG GACTTTTTAA CAATTTAGGT ATTAAAGATA AAACATTAAA AAGAATAGCA ATAGTCACAG TAATATTACT TAGTTTATTT TTTATAAAAG GGTTAAATAT TATTTATGCC TTAAATAGAG ATTTGTTTAA GGATGTAAGT GTAGTTTATG CTGCTGAAGA AATTATAGTA ATGACTCAAA TAATTCTTTG CATTATGATA TTATCTATAT GCTTTATATA TTATAGAGGA CTTAAACGAA AAGAGTTCTT TGGTATATCC CTTGTTTATG TAAGTATTAT TACTGAAATG ATTTTCATAG TCTTAACAGG AAAAATAGTT GAAAATCAGG TTTATGACTT GAATTTATTT AGTTTATTAT TTAGAGGGAT ATTACTACTT TTAGCTATTT TATGCCTTGA AAATTTTAAT GCTTTTATAA GGAAATATAA AAAATTAACA TTAGTACTTG TAATATTGGT AACTATTATA TTACAAATAT TAAATGTCAA TTATAACATA GGAATATATA CATATAATTT TATATATAAT TTAACTTTAG TTTTAATAGT TTTAACATAT ATATCTTGTA TAATATTTTG TTTAGTTAGA ATTTTTCAAT TTAGAGAAAT AACTTATTTA GTAATAATGA TAAGTTCTTC ACTTATGTTA TTAAAATTAG TTTATGGCCT TTCTTTAAGT ATAACTAATA ATAATCTTAT AAAAATAAAT ATTATATTTT TTAATTTTAT ATCATTTATA AGCTTTGTAT TTGGTATGTT TTTTGATTTA CTTCAGGTTA TAAAAAATAA AAATTTTATG CAAGAAGAAC TAAGTGCATT TTTTAACCTA ATAGAATTTG ATTGCAATAG TGAAGTTGTA GTACTTAGTA ACAATTTAAA AGTTCTTTAT GCAAATGAAA AATGTAGAAG TAAGAGAATA TCACCTGAAA ATAGAGAAAA TAAAACTTAT ATTGATTTAG AAAAACAAAT TAAAGGATTT TTATATGATA AAAATATAAT TTGTATAGAA AGTGTGCTTA GAAATTCTAA AGAATGGAAA GGTATAATAA AGTTAAATGG AGAGGATGAA GTTGTAAAGG TTAATCTTCA AAAGATAAAA AAAGAAAAAA ATCTTTATTA TGTACTTAGA ATTAATGATA TAACAGAAGA ATACAAAATG GAGAAAAATT TAAAATTAGA GGAGCAAAGG CTTAGAGGAG TTACTGAAAA TATAAAAGAT TTAATATTTA CAATTGATGT TGAAGGAAAA ATAAGCTATG TAAACAAAGC AGTAATAGAT GTTTTAGGAT ATAGTGAAGA AGAATTAATA GGGAAAAATT ATTATGATTT ATTATTAGTT GAATCTAATT TGAATATAAT AGACAGCAAA TATTTTAATG AAGATAAGAT TTTAACAATA GATAAGGTAA GATCTAAAAA AGGGTTGGTT CAATTAGAAT CTATTTCTAG TAGAATTAAG GATAATAAAA ATAATACCTT AGGATGGGTA AGAGTTGCTA GAAATATAGA GGATGTAAGA GAAATAGAAA TATTAAAGAA TAAATTTGAA GAAATAAAGC AATACGACAA GGTTAGAAGT GAGTTTTTTG CAAATTTATC TCATGAGCTT AGAACTCCTA TTAACATAAT ATATTCATGC ATACAGCTTT TAAACACTAG TAAAAAGAAT AAGGCAAACT TTGTTAATTT ATATGATAAG TATGAAAAAA CTTTAAAACA AAATTGTTTT AGGATGTTAA GGCTTGTAAA TAATCTTATA GATATAACAA AAATAGATTC TGGTTTTATT AAGATGGACT TTATTAATTA TGACATAATA AAGCTTACAG AAGATATAAC TATGTCTGTA ATTCCTTATG TAGAATCTAA GAATATAGAT ATAATCTTTG ATACTAATTG TGAGGAATTA GAGATAAGGT GTGACCCAGA TAAAATTGAG AGAATAATTT TAAATTTATT ATCTAATGCC ATAAAATTTA CAGAGCCAGG TGGAAAAATA GAAGTTAGTA TTTTGATAGA TGAAACTTGG GTAGATATAA GAGTTAAGGA TACAGGTATA GGAATTCCAT CACATATGAA AGAATTTATT TTTGGAAGAT TTATACAAAA TGATAAATCC TTAAATAGAA ATAAAGAAGG AAGTGGAATA GGGTTATCCT TAGTTAAATC TTTAGTGGAA TTACACGAAG GAAAAGTTTT CTTAAGAGAA AGTAATGAAT CAGGTAGTGA ATTTTCAATA TTACTACCTA ATGTGAAATT GGAGGATGAT GTTTGCGAAA ATAGAAGCTT AGATTATAAA ACAGAGGTTG AAAAAATATC AATAGAGTTT GCTGATATTT ATGAAATATA TTAG
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Protein sequence | MLIGLFNNLG IKDKTLKRIA IVTVILLSLF FIKGLNIIYA LNRDLFKDVS VVYAAEEIIV MTQIILCIMI LSICFIYYRG LKRKEFFGIS LVYVSIITEM IFIVLTGKIV ENQVYDLNLF SLLFRGILLL LAILCLENFN AFIRKYKKLT LVLVILVTII LQILNVNYNI GIYTYNFIYN LTLVLIVLTY ISCIIFCLVR IFQFREITYL VIMISSSLML LKLVYGLSLS ITNNNLIKIN IIFFNFISFI SFVFGMFFDL LQVIKNKNFM QEELSAFFNL IEFDCNSEVV VLSNNLKVLY ANEKCRSKRI SPENRENKTY IDLEKQIKGF LYDKNIICIE SVLRNSKEWK GIIKLNGEDE VVKVNLQKIK KEKNLYYVLR INDITEEYKM EKNLKLEEQR LRGVTENIKD LIFTIDVEGK ISYVNKAVID VLGYSEEELI GKNYYDLLLV ESNLNIIDSK YFNEDKILTI DKVRSKKGLV QLESISSRIK DNKNNTLGWV RVARNIEDVR EIEILKNKFE EIKQYDKVRS EFFANLSHEL RTPINIIYSC IQLLNTSKKN KANFVNLYDK YEKTLKQNCF RMLRLVNNLI DITKIDSGFI KMDFINYDII KLTEDITMSV IPYVESKNID IIFDTNCEEL EIRCDPDKIE RIILNLLSNA IKFTEPGGKI EVSILIDETW VDIRVKDTGI GIPSHMKEFI FGRFIQNDKS LNRNKEGSGI GLSLVKSLVE LHEGKVFLRE SNESGSEFSI LLPNVKLEDD VCENRSLDYK TEVEKISIEF ADIYEIY
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