| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_0877 |
|---|
| Symbol | |
|---|
| ID | 4204180 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 1012783 |
|---|
| End bp | 1013931 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 642565436 |
|---|
| Product | sialidase |
|---|
| Protein accession | YP_698202 |
|---|
| Protein GI | 110802436 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4409] Neuraminidase (sialidase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0420038 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAACA AAAACAACAC CTTTGAAAAA AATCTAGATA TAAGCCATAA ACCAGAACCA
CTAATACTAT TTAACAAGGA TAGTAACATA TGGAATTCAA AGTATTTTAG AATTCCCAAT
ATACAATTAT TAAATGATGG CACAATTTTA ACCTTTTCAG ATATTCGTTA TAATGGCCCT
GATGACCATG CTTATATAGA CATAGCTTCT GCACGCAGTA CTGATTTTGG AAAGACATGG
AGCTATGATG TAGCAATGAA AAATAATCGT ATTGACTCTA CTTATTCTCG TGTAATGGAC
TCCACAACAG TTATTACAAA TACAGGTAGA ATAATATTAA TTGCAGGCTC ATGGAATACA
AATGGAAACT GGGCAATGAC TACTTCTGCA AGAAGAAGTG ATTGGTCTGT TCAAATTATT
TATTCTGATG ATAATGGATT AACTTGGTCT AACAAAATAG ATTTAACCAA GGACTCATCA
AAAGTAAAAA ATCAACCAAG TAATACAATT GGATGGCTAG GAGGAGTTGG CTCAGGTATT
GTAATGGATG ATGGAACAAT AGTTATGCCA GCACAAATTT CCTTAAGAGA AAATAATGAA
AATAACTATT ATTCATTAAT TATCTATTCA AAGGATAATG GTGAAACATG GACAATGGGA
AACAAGGTTC CTAATTCAAA TACTTCTGAA AATATGGTCA TAGAATTAGA TGGAGCTTTA
ATTATGAGTA CAAGATATGA TTACTCTGGT TATAGGGCAG CATACATCTC TCACGATTTA
GGAAGCACCT GGGAAATATA TGAACCTTTA AACGGTAAAG TTTTAACTGG TAAGGGCTCT
GGATGCCAAG GTTCATTTAT TAAAGCTACT ACTTCAAATG GACATAGAAT AGGATTAATT
TCAGCACCTA AAAACACTAA AGGTGAATAT ATAAGAGACA ATATTGCTGT TTATATGATT
GACTTTGATG ATTTATCTAA AGGTGTTCAG GAAATATGTA TTCCTTACCC TAAAGATGGT
AACAAATTAG GCGGTGGCTA TTCTTGTCTA TCCTTTAAAA ATGACCATTT AGCCATTGTT
TATGAAGCCA ACGGAAATAT AGAATATCAA GACTTAACAC CTTATTACTT ACTAATTGAT
AAAGAATAA
|
|---|
| Protein sequence | MRNKNNTFEK NLDISHKPEP LILFNKDSNI WNSKYFRIPN IQLLNDGTIL TFSDIRYNGP
DDHAYIDIAS ARSTDFGKTW SYDVAMKNNR IDSTYSRVMD STTVITNTGR IILIAGSWNT
NGNWAMTTSA RRSDWSVQII YSDDNGLTWS NKIDLTKDSS KVKNQPSNTI GWLGGVGSGI
VMDDGTIVMP AQISLRENNE NNYYSLIIYS KDNGETWTMG NKVPNSNTSE NMVIELDGAL
IMSTRYDYSG YRAAYISHDL GSTWEIYEPL NGKVLTGKGS GCQGSFIKAT TSNGHRIGLI
SAPKNTKGEY IRDNIAVYMI DFDDLSKGVQ EICIPYPKDG NKLGGGYSCL SFKNDHLAIV
YEANGNIEYQ DLTPYYLLID KE
|
|---|
| |