| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2886 |
|---|
| Symbol | cspC |
|---|
| ID | 4202413 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 3154643 |
|---|
| End bp | 3156391 |
|---|
| Gene Length | 1749 bp |
|---|
| Protein Length | 582 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 638083753 |
|---|
| Product | serine protease C |
|---|
| Protein accession | YP_697250 |
|---|
| Protein GI | 110800108 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACTG TATCTAATAA AGCGAATCTA TTAGTTGACC CTGAAAGCAT GAATTTTCTT
GTTGAATATA GAGGGGATAT AGAGAATGAA GTTAAGGATA TTGAAAATGT TGAAGTCTAT
ATAATTGATG GTACTTATGC TGTTTTATCC ATGAAAAATG TTGACTATGA TAGTGTTATT
CAGATGATAA ATTCCTTGGT TTTTATAGAG CTCGGAGGAA TATATACTCT AAGTAGTACA
AGTCCTATAG AGGCCTCTAA GGCAGAAAAC TTTCATAATA GTCCATACTT AAAATTGACA
GGGGAAGATG TGATTGTTGG AATTATTGAT ACTGGAATAG ATTATTTAAA TCCTGAATTT
ACTGATAGTA ATGGAAAGAC TAGAATATTA AAAATATGGG ATCAATCATT AAAAACAGAT
AAGTATCCCA AAGATATGTT TTATGGAACT GAGTATAGTG AAGAAGAAAT CAATCAAGCA
ATAGAACTTA ATAATAGTGG CGGAGATCCA TATACCATAG TTCAATCTAA AGATGATGTA
GGACATGGAA CAGAGATGGC TTGTATAATA GCAGGAAGTG GAAAGGATGA AAGTTTAACA
GGGGTAGTTC CAGAATGTGA CCTTGCAATA GTAAAGTTAG ATAGAGCTTT TAAAAAATAC
ACAGATTATT TCTTTGCAAA GGGTGACGCT GTTAAGTATA GAAATGTAGA CATACTTTTA
GCAATGAAAT ATTTATATAA TTTATCATTT CAATATAATA AACCAATGGT TATATATATT
CCTATGGGAA CTAATTTTGG AGCCCATGAT GGATCAAGTA TTTTAGAAAG ATATATAAAT
GATATTTCAA ATAAAAGAGG AATTGCTGTA ATTGCTTCAT CTGGCAATCA AGGAAATACT
AATACCCATG CTGATGGAAT AATAACAGAG ATGGGTGATA ATAAAACCAT AGAGCTTGAT
GTTGGAGAGG ATCAAGATGG TATTATGATG ATTATTTTAG GTTATAAACC TGATAAATTT
AAGCTTTCAA TAATTTCACC ATCAGGAGAA CTTATTGAAA ATGCTAATCC CTTAACTAAC
TATGGTGGAA ATAAAAATTT AGCTGTTGAA AATGGATATA AAATAAATTT TATATATGAA
GGAACAACTA TGGATGTTTT TTATGATTCG CCAGATGAAC TTACTGGAGG GGAGAGAATT
GTAATAAGAG CACAAAATTT AAAGCCTGGT ATATGGAGAT TTAGATTAAC TGGACAGCAT
ATAACCTTTG GAAATTTTGA TGCCTATATA TTGCAAAAAG AATTATTAGC AGAGGGAACA
AAATTTTTAA TATCATCACC ATACACAACA TTGACCATTC CAGGAGCCGC AGAGAAAATG
ATAACTGTAG CTTCATATAA TCAAGAGAAT AATACCATAT TATCTTCATC AGGAAGAGGG
TATGCAAGAA ATGATATTAT TCAACCTATT ATTGCAGCAG GTGGAGTAAA TGCTTTAACT
ATAAACAACA AAGGAGAAAA GGTATCAGTT AGTGGGGGAA GCGTCGCTGC GGCTATAGTA
GCTGGGTGCT GTGCAATGTT ATTTCAATGG GGAATTGTTT ATAATAATGA TCCAACACTA
TATGTAGCTA AACTTCAAAC CTATCTAATA AGAGGTGTGA ATACTAGGGA AGGTGACATG
TACCCAAATC GAGAGTGGGG ATATGGAACT ATAGATATGA TCAATGTTTT TAATAGTTTA
AGAACTTAG
|
|---|
| Protein sequence | METVSNKANL LVDPESMNFL VEYRGDIENE VKDIENVEVY IIDGTYAVLS MKNVDYDSVI
QMINSLVFIE LGGIYTLSST SPIEASKAEN FHNSPYLKLT GEDVIVGIID TGIDYLNPEF
TDSNGKTRIL KIWDQSLKTD KYPKDMFYGT EYSEEEINQA IELNNSGGDP YTIVQSKDDV
GHGTEMACII AGSGKDESLT GVVPECDLAI VKLDRAFKKY TDYFFAKGDA VKYRNVDILL
AMKYLYNLSF QYNKPMVIYI PMGTNFGAHD GSSILERYIN DISNKRGIAV IASSGNQGNT
NTHADGIITE MGDNKTIELD VGEDQDGIMM IILGYKPDKF KLSIISPSGE LIENANPLTN
YGGNKNLAVE NGYKINFIYE GTTMDVFYDS PDELTGGERI VIRAQNLKPG IWRFRLTGQH
ITFGNFDAYI LQKELLAEGT KFLISSPYTT LTIPGAAEKM ITVASYNQEN NTILSSSGRG
YARNDIIQPI IAAGGVNALT INNKGEKVSV SGGSVAAAIV AGCCAMLFQW GIVYNNDPTL
YVAKLQTYLI RGVNTREGDM YPNREWGYGT IDMINVFNSL RT
|
|---|
| |