Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_2238 |
Symbol | |
ID | 4203879 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | - |
Start bp | 2483377 |
End bp | 2485539 |
Gene Length | 2163 bp |
Protein Length | 720 aa |
Translation table | 11 |
GC content | 31% |
IMG OID | 638083103 |
Product | DNA topoisomerase |
Protein accession | YP_696662 |
Protein GI | 110800113 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA |
TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.735062 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAAAAAGG TAATAATTGC AGAAAAACCA TCTGTTGCTA GAAATATTGC AGATGCTTTT AATATAAAAA AGAGAAAAGA TGGATACTTT GAAGGCGAAG AATATCTTAT AACATGGGCT TTCGGACACT TATTGCAGTT ATTTGATGCA AAGGATTATG ATGAGAACAT GAAGGGATGG AGAATGGAAA AATTTCCTTT TATCCCAGAA GTTTTTAGAT ATAAAATAAA ACAAGATTCT TTAAATAGAA ACATCATTGA TAAGGGTGCG GAAAAGCAAA TAAAGATAAT AAAAGGTCTT ATAGATAGAG AAGATGTAGA TGGAATAATT TCTGCTACTG ACTTTGATAG AGAAGGACAA GTAATTGCAG ATGAAATTTT CCTATATTTT AGTGAAAAGA AACCAGTATA TAGACTTTTA TTAAATGAAT GGACACCAGA TGAAGTTAAA AAAGGAATGG AAAAGTTAAA ACCTAATGAG GAAATGCAAT CTCTTCAAGA TGCTGGTATA GGAAGACAGT GGGCAGACTG GATAATAGGT ATAAACTTAA CTTCTGTGAC AACAATAAAA TATAAGCTAA ATGATGGACA GATTTTAAAT ATAGGGAGAG TTCTTCTACC TACTTTAAAA ATAATTTATG ACAGAGATAA AGAAATAGAG AACTTTAAAT CAAGTGCATA TTACAAACTT AATGGTACTT TTAAGACTTC AAAAAATGAG GAGTTTGAAG GAACTTATTA TGAAAATAAT TCAGAGAAGT TTGAAGATAA AAAGGTTTTA GATGAGATTA AAGAAAAGAT AAAGGATAAA AATGCTGAAA TAATTGAAAA GCAAACAGAA AGAAAAAAAG AATATCCACC ATTTTTATTT AATCTTTCTA ATCTTCAAGG ATACATAACA AGTAAATACA AAGGATGGAC TTCAGATAAG GTTTTAAAAG TAGCTCAATC TTTATATGAA AAGAAGTTTA TAACTTATCC TAGAACAGGA AGTATGGCTC TAGAGGAGAG CTTAGTTGAT AGAACTAGAA ATGTTTTAGA AAAGCTTAAG GTAGGCTTGC CTTATGAGGA GCAAATAAAG TTTGTTCAAA ATAAAAGGGT TTTTGATAAT TCAAAGGTTG AGAGCCATAG TGCCATAGTT CCAACTTACA TGAAACCTAA TAATTTAACA CAAGATGAAA GAATAGTTTA CACAGCAGTT AAAAATAGAT TTCTTATGCA ATTTATGCCC GTAGCTGAAT TTGAGGAAAC AAAAATAACT TCTAAGGTAA ATGATAAAGA GGTTAAGGGC GTATTTATTT CAAAAGGAAA AGTTCAGCTT GTAGAAGGAT GGAGAGTTGT TGAAAAAATA GATAGTAAAG ATACAATTCT TCCAATGGTA AATGAAAAAG AAGTAGTAGA CTTAGTAGAT AGTAAAATAA ATAAGGTTAC TAAAAAACCA CCTAAAAAGC ATACTGAGAA GACTTTACTT AGGGTAATGG AGACTTGTGG TAAGAGTTTT AAAGAGGATG CAGAGGAAGA TAGTGAAGAA ATGATGGCCT CAATATTAAG TGGATTTAGT ATAGGAACAC CTGCTACTAG AGCTGAAACA ATTAAAAAGC TTAAGGATGT AGGATATATT ACCACAAAGG GAAAAAGTTT AACTTGTACA GAGCTTGGTA GAACCATAGT TGAAATATTC CCTGTTAAGG AACTTTTAGA TTTAGAATAC ACAGGAAGAC TAGAAAAAAC TCTTTCTGAT ATAGAAAGAG GGAAGGTAAA AAAAGAAGAT TTCTTAAATC TTATAAAAAA CTTTACTATA GAGGGAGTTA AGGCTATAAA AAATGATGAT TCCATGGCAA AACACTTTAA AGTAGAGGCT CCAGAAGGGG TAGAGGTTTT AGGAAAATGT CCTAACTGTG GAAATCCTGT TATAGAGGGA GAAAGAGGAT TTGGATGTGT TAACTGGAAA AATGGATGTA AATATACCAT ATGGAAAAAT GATAAGTATA TAGCTTCCTT TGGAAAACAA GTAACACCTC AGATGGTAAA ACTTCTATTA GCTAATGGAA AAGTTGGATT TAGAAATTTA AAAAGTAAAA AGGGAAATAC CTTTGCAGCA TACTTCATAT ATGAAAAAGA TGAAGAAAAA GGTTATTTCA CATGGAGAAT GGAATTTATT TAA
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Protein sequence | MKKVIIAEKP SVARNIADAF NIKKRKDGYF EGEEYLITWA FGHLLQLFDA KDYDENMKGW RMEKFPFIPE VFRYKIKQDS LNRNIIDKGA EKQIKIIKGL IDREDVDGII SATDFDREGQ VIADEIFLYF SEKKPVYRLL LNEWTPDEVK KGMEKLKPNE EMQSLQDAGI GRQWADWIIG INLTSVTTIK YKLNDGQILN IGRVLLPTLK IIYDRDKEIE NFKSSAYYKL NGTFKTSKNE EFEGTYYENN SEKFEDKKVL DEIKEKIKDK NAEIIEKQTE RKKEYPPFLF NLSNLQGYIT SKYKGWTSDK VLKVAQSLYE KKFITYPRTG SMALEESLVD RTRNVLEKLK VGLPYEEQIK FVQNKRVFDN SKVESHSAIV PTYMKPNNLT QDERIVYTAV KNRFLMQFMP VAEFEETKIT SKVNDKEVKG VFISKGKVQL VEGWRVVEKI DSKDTILPMV NEKEVVDLVD SKINKVTKKP PKKHTEKTLL RVMETCGKSF KEDAEEDSEE MMASILSGFS IGTPATRAET IKKLKDVGYI TTKGKSLTCT ELGRTIVEIF PVKELLDLEY TGRLEKTLSD IERGKVKKED FLNLIKNFTI EGVKAIKNDD SMAKHFKVEA PEGVEVLGKC PNCGNPVIEG ERGFGCVNWK NGCKYTIWKN DKYIASFGKQ VTPQMVKLLL ANGKVGFRNL KSKKGNTFAA YFIYEKDEEK GYFTWRMEFI
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